RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 WWC3Q9ULE0 1092 aa15.07■□□□□ 0
USP40-214ENST00000483519 EIF3CLB5ME19 914 aaKnown RBP15.07■□□□□ 0
USP40-214ENST00000483519 ACTN4O43707 911 aaKnown RBP15.07■□□□□ 0
USP40-214ENST00000483519 ZAP70P43403 619 aa15.07■□□□□ 0
USP40-214ENST00000483519 ICE2Q659A1 982 aa15.07■□□□□ 0
USP40-214ENST00000483519 WWC2Q6AWC2 1192 aa15.07■□□□□ 0
USP40-214ENST00000483519 APTXQ7Z2E3 356 aaKnown RBP15.07■□□□□ 0
USP40-214ENST00000483519 TMTC1Q8IUR5 882 aa15.07■□□□□ 0
USP40-214ENST00000483519 TBC1D10CQ8IV04 446 aa15.07■□□□□ 0
USP40-214ENST00000483519 CTCFLQ8NI51 663 aaPredicted RBP15.07■□□□□ 0
USP40-214ENST00000483519 EIF3CQ99613 913 aaKnown RBP15.07■□□□□ 0
USP40-214ENST00000483519 VIPAS39Q9H9C1 493 aa15.07■□□□□ 0
USP40-214ENST00000483519 ADD3Q9UEY8 706 aaKnown RBP15.07■□□□□ 0
USP40-214ENST00000483519 ITIH6Q6UXX5 1313 aa15.06■□□□□ 0
USP40-214ENST00000483519 A0A0G2JS52 829 aa15.06■□□□□ 0
USP40-214ENST00000483519 MMP1P03956 469 aa15.06■□□□□ 0
USP40-214ENST00000483519 FECHP22830 423 aa15.06■□□□□ 0
USP40-214ENST00000483519 MCM3P25205 808 aa15.06■□□□□ 0
USP40-214ENST00000483519 SGMS1Q86VZ5 419 aa15.06■□□□□ 0
USP40-214ENST00000483519 PUS3Q9BZE2 481 aaKnown RBP15.06■□□□□ 0
USP40-214ENST00000483519 A0A0U1RQJ8 604 aa15.06■□□□□ 0
USP40-214ENST00000483519 FMNL1O95466 1100 aaPredicted RBP15.06■□□□□ 0
USP40-214ENST00000483519 ADORA1P30542 326 aa15.06■□□□□ 0
USP40-214ENST00000483519 CASP14P31944 242 aa15.06■□□□□ 0
USP40-214ENST00000483519 GRAMD1CQ8IYS0 662 aa15.06■□□□□ 0
USP40-214ENST00000483519 ATRIPQ8WXE1 791 aa15.06■□□□□ 0
USP40-214ENST00000483519 DCAF5Q96JK2 942 aa15.06■□□□□ 0
USP40-214ENST00000483519 FOXP1Q9H334 677 aaPredicted RBP15.06■□□□□ 0
USP40-214ENST00000483519 YY1AP1Q9H869 796 aa15.06■□□□□ 0
USP40-214ENST00000483519 FAM204AQ9H8W3 233 aa15.06■□□□□ 0
USP40-214ENST00000483519 SRPRBQ9Y5M8 271 aaKnown RBP15.06■□□□□ 0
USP40-214ENST00000483519 BTBD18B2RXH4 712 aa15.05■□□□□ 0
USP40-214ENST00000483519 TOB1P50616 345 aaPredicted RBP15.05■□□□□ 0
USP40-214ENST00000483519 CORO7P57737 925 aa15.05■□□□□ 0
USP40-214ENST00000483519 GRIN1Q05586 938 aa15.05■□□□□ 0
USP40-214ENST00000483519 CCDC57Q2TAC2 916 aa15.05■□□□□ 0
USP40-214ENST00000483519 MAP9Q49MG5 647 aa15.05■□□□□ 0
USP40-214ENST00000483519 LRRC31Q6UY01 552 aa15.05■□□□□ 0
USP40-214ENST00000483519 DIS3L2Q8IYB7 885 aaKnown RBP15.05■□□□□ 0
USP40-214ENST00000483519 CCDC148Q8NFR7 591 aa15.05■□□□□ 0
USP40-214ENST00000483519 CDC5LQ99459 802 aaKnown RBP15.05■□□□□ 0
USP40-214ENST00000483519 B4E1Z4 1266 aa15.05■□□□□ -0
USP40-214ENST00000483519 GTF2A1P52655 376 aaPredicted RBP15.05■□□□□ -0
USP40-214ENST00000483519 TMEM67Q5HYA8 995 aa15.05■□□□□ -0
USP40-214ENST00000483519 CDKAL1Q5VV42 579 aa15.05■□□□□ -0
USP40-214ENST00000483519 FOXR1Q6PIV2 292 aa15.05■□□□□ -0
USP40-214ENST00000483519 LY9Q9HBG7 655 aa15.05■□□□□ -0
USP40-214ENST00000483519 BRMS1Q9HCU9 246 aa15.05■□□□□ -0
USP40-214ENST00000483519 MYO6Q9UM54 1294 aa15.05■□□□□ -0
USP40-214ENST00000483519 TBC1D2BQ9UPU7 963 aa15.05■□□□□ -0
USP40-214ENST00000483519 MEGF6O75095 1541 aa15.05■□□□□ -0
USP40-214ENST00000483519 NUP188Q5SRE5 1749 aa15.04■□□□□ -0
USP40-214ENST00000483519 PHACTR2O75167 634 aa15.04■□□□□ -0
USP40-214ENST00000483519 AARSP49588 968 aaKnown RBP eCLIP15.04■□□□□ -0
USP40-214ENST00000483519 SCARF1Q14162 830 aa15.04■□□□□ -0
USP40-214ENST00000483519 CERS3Q8IU89 383 aa15.04■□□□□ -0
USP40-214ENST00000483519 SEPT12Q8IYM1 358 aa15.04■□□□□ -0
USP40-214ENST00000483519 TRIM22Q8IYM9 498 aa15.04■□□□□ -0
USP40-214ENST00000483519 IGDCC4Q8TDY8 1250 aa15.04■□□□□ -0
USP40-214ENST00000483519 AFAP1L1Q8TED9 768 aa15.04■□□□□ -0
USP40-214ENST00000483519 FAM217BQ9NTX9 383 aaPredicted RBP15.04■□□□□ -0
USP40-214ENST00000483519 DENND2AQ9ULE3 1009 aa15.04■□□□□ -0
USP40-214ENST00000483519 SLC12A7Q9Y666 1083 aa15.04■□□□□ -0
USP40-214ENST00000483519 SHANK3Q9BYB0 1731 aa15.04■□□□□ -0
USP40-214ENST00000483519 LRRIQ3A6PVS8 624 aaPredicted RBP15.04■□□□□ -0
USP40-214ENST00000483519 EXOC5O00471 708 aa15.04■□□□□ -0
USP40-214ENST00000483519 PPFIA4O75335 1185 aa15.04■□□□□ -0
USP40-214ENST00000483519 GYPCP04921 128 aa15.04■□□□□ -0
USP40-214ENST00000483519 APPP05067 770 aa15.04■□□□□ -0
USP40-214ENST00000483519 IFNAR1P17181 557 aa15.04■□□□□ -0
USP40-214ENST00000483519 LIFRP42702 1097 aa15.04■□□□□ -0
USP40-214ENST00000483519 KLHL10Q6JEL2 608 aa15.04■□□□□ -0
USP40-214ENST00000483519 CYP26C1Q6V0L0 522 aa15.04■□□□□ -0
USP40-214ENST00000483519 ACRBPQ8NEB7 543 aa15.04■□□□□ -0
USP40-214ENST00000483519 DISP2A7MBM2 1401 aa15.04■□□□□ -0
USP40-214ENST00000483519 RNF40O75150 1001 aa15.03■□□□□ -0
USP40-214ENST00000483519 TRIM14Q14142 442 aa15.03■□□□□ -0
USP40-214ENST00000483519 SENP2Q9HC62 589 aa15.03■□□□□ -0
USP40-214ENST00000483519 ADD2P35612 726 aa15.03■□□□□ -0
USP40-214ENST00000483519 CUL4BQ13620 913 aa15.03■□□□□ -0
USP40-214ENST00000483519 NKX1-1Q15270 411 aaPredicted RBP15.03■□□□□ -0
USP40-214ENST00000483519 DDB1Q16531 1140 aa15.03■□□□□ -0
USP40-214ENST00000483519 EFCAB13Q8IY85 973 aa15.03■□□□□ -0
USP40-214ENST00000483519 MYL10Q9BUA6 226 aa15.03■□□□□ -0
USP40-214ENST00000483519 WNK3Q9BYP7 1800 aa15.03■□□□□ -0
USP40-214ENST00000483519 FXR1P51114 621 aaKnown RBP eCLIP15.02■□□□□ -0
USP40-214ENST00000483519 NOA1Q8NC60 698 aaKnown RBP15.02■□□□□ -0
USP40-214ENST00000483519 FAM107BQ9H098 131 aa15.02■□□□□ -0
USP40-214ENST00000483519 ABHD10Q9NUJ1 306 aa15.02■□□□□ -0
USP40-214ENST00000483519 JRKLQ9Y4A0 524 aa15.02■□□□□ -0
USP40-214ENST00000483519 MYO5AQ9Y4I1 1855 aaKnown RBP15.02■□□□□ -0
USP40-214ENST00000483519 NID2Q14112 1375 aa15.02■□□□□ -0
USP40-214ENST00000483519 STX17P56962 302 aa15.02□□□□□ -0.01
USP40-214ENST00000483519 AMPD2Q01433 879 aa15.02□□□□□ -0.01
USP40-214ENST00000483519 TTF1Q15361 905 aaPredicted RBP15.02□□□□□ -0.01
USP40-214ENST00000483519 PACS2Q86VP3 889 aa15.02□□□□□ -0.01
USP40-214ENST00000483519 CSRNP2Q9H175 543 aa15.02□□□□□ -0.01
USP40-214ENST00000483519 PCDHB6Q9Y5E3 794 aa15.02□□□□□ -0.01
USP40-214ENST00000483519 THSD7AQ9UPZ6 1657 aa15.02□□□□□ -0.01
USP40-214ENST00000483519 ARHGAP25P42331 645 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms