RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 MORF4L1Q9UBU8 362 aa17.94■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L12C9JPN9 530 aa17.93■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L21D6R901 530 aa17.93■□□□□ 0.46
LIMS3-204ENST00000482065 CCL5P13501 91 aa17.93■□□□□ 0.46
LIMS3-204ENST00000482065 C12orf60Q5U649 245 aa17.93■□□□□ 0.46
LIMS3-204ENST00000482065 POTEEQ6S8J3 1075 aa17.93■□□□□ 0.46
LIMS3-204ENST00000482065 KIAA1683Q9H0B3 1180 aa17.93■□□□□ 0.46
LIMS3-204ENST00000482065 MYH8P13535 1937 aa17.93■□□□□ 0.46
LIMS3-204ENST00000482065 VCAM1P19320 739 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 USP14P54578 494 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 UBXN2AP68543 259 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 IRF5Q13568 498 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 PRPF38BQ5VTL8 546 aaKnown RBP17.92■□□□□ 0.46
LIMS3-204ENST00000482065 SHISA4Q96DD7 197 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 PAGR1Q9BTK6 254 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 RBPJLQ9UBG7 517 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 SWAP70Q9UH65 585 aa17.92■□□□□ 0.46
LIMS3-204ENST00000482065 A0A1W2PRG0 241 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L15C9J2P7 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L13C9JLJ4 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L11C9JVI0 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L18D6R9N7 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L22D6RA61 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L17D6RBQ6 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L19D6RCP7 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L20D6RJB6 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 INHAP05111 366 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 AKR1B1P15121 316 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 USP17L24Q0WX57 530 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 Q3C1V9 767 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 CLEC10AQ8IUN9 316 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 GPRC5AQ8NFJ5 357 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 PI4K2BQ8TCG2 481 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 APPBP2Q92624 585 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 OSBP2Q969R2 916 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 DDRGK1Q96HY6 314 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 STRBPQ96SI9 672 aaKnown RBP17.91■□□□□ 0.46
LIMS3-204ENST00000482065 RNF208Q9H0X6 261 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 UNC93B1Q9H1C4 597 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 TTC41PQ6P2S7 1318 aa17.91■□□□□ 0.46
LIMS3-204ENST00000482065 RNF113AO15541 343 aaKnown RBP17.9■□□□□ 0.46
LIMS3-204ENST00000482065 CDK8P49336 464 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 ERVK-9P63128 1117 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 ERVK-24P63145 666 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 CTR9Q6PD62 1173 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 TMEM179Q6ZVK1 233 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 AMOTL1Q8IY63 956 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 PXYLP1Q8TE99 480 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 GJD2Q9UKL4 321 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 PLXNB2O15031 1838 aa17.9■□□□□ 0.46
LIMS3-204ENST00000482065 M0R2C6 588 aa17.89■□□□□ 0.45
LIMS3-204ENST00000482065 CATSPERGQ6ZRH7 1159 aa17.89■□□□□ 0.45
LIMS3-204ENST00000482065 C16orf86Q6ZW13 317 aa17.89■□□□□ 0.45
LIMS3-204ENST00000482065 PORCNQ9H237 461 aa17.89■□□□□ 0.45
LIMS3-204ENST00000482065 RPAP3Q9H6T3 665 aaPredicted RBP17.89■□□□□ 0.45
LIMS3-204ENST00000482065 GSG1L2A8MUP6 293 aa17.88■□□□□ 0.45
LIMS3-204ENST00000482065 ERC2O15083 957 aa17.88■□□□□ 0.45
LIMS3-204ENST00000482065 GPAA1O43292 621 aa17.88■□□□□ 0.45
LIMS3-204ENST00000482065 CNMDO75829 334 aa17.88■□□□□ 0.45
LIMS3-204ENST00000482065 GLRX3O76003 335 aaKnown RBP17.88■□□□□ 0.45
LIMS3-204ENST00000482065 GJB1P08034 283 aa17.88■□□□□ 0.45
LIMS3-204ENST00000482065 MX1P20591 662 aa17.88■□□□□ 0.45
LIMS3-204ENST00000482065 ANKRD45Q5TZF3 282 aa17.88■□□□□ 0.45
LIMS3-204ENST00000482065 GTF3C2Q8WUA4 911 aaPredicted RBP17.88■□□□□ 0.45
LIMS3-204ENST00000482065 ZFYP08048 801 aaPredicted RBP17.87■□□□□ 0.45
LIMS3-204ENST00000482065 CYP2B6P20813 491 aa17.87■□□□□ 0.45
LIMS3-204ENST00000482065 GJA8P48165 433 aa17.87■□□□□ 0.45
LIMS3-204ENST00000482065 ICA1Q05084 483 aa17.87■□□□□ 0.45
LIMS3-204ENST00000482065 KIAA1755Q5JYT7 1200 aa17.87■□□□□ 0.45
LIMS3-204ENST00000482065 SIAH1Q8IUQ4 282 aa17.87■□□□□ 0.45
LIMS3-204ENST00000482065 STK11IPQ8N1F8 1099 aa17.87■□□□□ 0.45
LIMS3-204ENST00000482065 SEC62Q99442 399 aaKnown RBP17.87■□□□□ 0.45
LIMS3-204ENST00000482065 ARPP21Q9UBL0 812 aaPredicted RBP17.87■□□□□ 0.45
LIMS3-204ENST00000482065 SALL3Q9BXA9 1300 aa17.87■□□□□ 0.45
LIMS3-204ENST00000482065 SPDYE16A6NNV3 312 aaPredicted RBP17.86■□□□□ 0.45
LIMS3-204ENST00000482065 TRIM32Q13049 653 aa17.86■□□□□ 0.45
LIMS3-204ENST00000482065 HDAC1Q13547 482 aaPredicted RBP17.86■□□□□ 0.45
LIMS3-204ENST00000482065 CCAR1Q8IX12 1150 aaKnown RBP17.86■□□□□ 0.45
LIMS3-204ENST00000482065 NKX2-3Q8TAU0 364 aa17.86■□□□□ 0.45
LIMS3-204ENST00000482065 U2AF1L4Q8WU68 220 aaKnown RBP17.86■□□□□ 0.45
LIMS3-204ENST00000482065 CCDC17Q96LX7 622 aa17.86■□□□□ 0.45
LIMS3-204ENST00000482065 FSD1Q9BTV5 496 aa17.86■□□□□ 0.45
LIMS3-204ENST00000482065 EPB41L4AQ9HCS5 686 aaPredicted RBP17.86■□□□□ 0.45
LIMS3-204ENST00000482065 ZBTB47Q9UFB7 747 aaPredicted RBP17.86■□□□□ 0.45
LIMS3-204ENST00000482065 RABGAP1Q9Y3P9 1069 aa17.86■□□□□ 0.45
LIMS3-204ENST00000482065 MINDY4BA8MYZ0 360 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 MAPK4P31152 587 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 SBK1Q52WX2 424 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 GPR142Q7Z601 462 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 TRIB2Q92519 343 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 GCC1Q96CN9 775 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 NUDT12Q9BQG2 462 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 ARHGEF10LQ9HCE6 1279 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 BTBD7Q9P203 1132 aa17.85■□□□□ 0.45
LIMS3-204ENST00000482065 HMGCRP04035 888 aa17.84■□□□□ 0.45
LIMS3-204ENST00000482065 ATP2B2Q01814 1243 aa17.84■□□□□ 0.45
LIMS3-204ENST00000482065 LRRFIP1Q32MZ4 808 aaKnown RBP17.84■□□□□ 0.45
LIMS3-204ENST00000482065 GIMAP6Q6P9H5 292 aa17.84■□□□□ 0.45
LIMS3-204ENST00000482065 LBX2Q6XYB7 198 aa17.84■□□□□ 0.45
LIMS3-204ENST00000482065 PLEKHH3Q7Z736 793 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms