RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	FDPS	P14324	419 aa	Known RBP	13.09	□□□□□ -0.31
APTX-223	ENST00000479656	HIRA	P54198	1017 aa	Predicted RBP	13.09	□□□□□ -0.31
APTX-223	ENST00000479656	HMGN5	P82970	282 aa	Known RBP	13.09	□□□□□ -0.31
APTX-223	ENST00000479656	NTRK3	Q16288	839 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	RTN1	Q16799	776 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	DPY19L2	Q6NUT2	758 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	FAM184A	Q8NB25	1140 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	CCDC17	Q96LX7	622 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	TMEM47	Q9BQJ4	181 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
APTX-223	ENST00000479656	PGAP2	Q9UHJ9	254 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	SIPA1L1	O43166	1804 aa		13.09	□□□□□ -0.31
APTX-223	ENST00000479656	BRD1	O95696	1058 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	RCAN1	P53805	252 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.08	□□□□□ -0.32
APTX-223	ENST00000479656	MIGA2	Q7L4E1	593 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	CMTR1	Q8N1G2	835 aa	Known RBP	13.08	□□□□□ -0.32
APTX-223	ENST00000479656	CCDC82	Q8N4S0	544 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	PNMA1	Q8ND90	353 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	MTMR4	Q9NYA4	1195 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	HERC5	Q9UII4	1024 aa	Known RBP	13.08	□□□□□ -0.32
APTX-223	ENST00000479656	IGKV6D-41	A0A0C4DH26	115 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	DDAH1	O94760	285 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	CALM1	P0DP23	149 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	CALM2	P0DP24	149 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	CALM3	P0DP25	149 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	NOV	P48745	357 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	TNFAIP1	Q13829	316 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	RRP1B	Q14684	758 aa	Known RBP	13.08	□□□□□ -0.32
APTX-223	ENST00000479656	ANGEL2	Q5VTE6	544 aa	Known RBP	13.08	□□□□□ -0.32
APTX-223	ENST00000479656	CPLX2	Q6PUV4	134 aa	Known RBP	13.08	□□□□□ -0.32
APTX-223	ENST00000479656	CLEC10A	Q8IUN9	316 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	PHKB	Q93100	1093 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	TAOK2	Q9UL54	1235 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	MTMR7	Q9Y216	660 aa		13.08	□□□□□ -0.32
APTX-223	ENST00000479656	NID2	Q14112	1375 aa		13.07	□□□□□ -0.32
APTX-223	ENST00000479656	CCDC196	A0A1B0GTZ2	297 aa		13.07	□□□□□ -0.32
APTX-223	ENST00000479656	GDF11	O95390	407 aa		13.07	□□□□□ -0.32
APTX-223	ENST00000479656	PDC	P20941	246 aa		13.07	□□□□□ -0.32
APTX-223	ENST00000479656	LMOD1	P29536	600 aa	Predicted RBP	13.07	□□□□□ -0.32
APTX-223	ENST00000479656	PPP2R5B	Q15173	497 aa		13.07	□□□□□ -0.32
APTX-223	ENST00000479656	DEFB129	Q9H1M3	183 aa		13.07	□□□□□ -0.32
APTX-223	ENST00000479656	ORC3	Q9UBD5	711 aa	Predicted RBP	13.07	□□□□□ -0.32
APTX-223	ENST00000479656	CLIP2	Q9UDT6	1046 aa		13.07	□□□□□ -0.32
APTX-223	ENST00000479656	WDR33	Q9C0J8	1336 aa	Known RBP	13.07	□□□□□ -0.32
APTX-223	ENST00000479656	PLIN4	Q96Q06	1357 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	VPS37C	A5D8V6	355 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-223	ENST00000479656	TBC1D12	O60347	775 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	CDKL5	O76039	1030 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	TOP1	P11387	765 aa	Known RBP	13.06	□□□□□ -0.32
APTX-223	ENST00000479656	FOSB	P53539	338 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	JAG1	P78504	1218 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	ABCB5	Q2M3G0	1257 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	TEPSIN	Q96N21	525 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	MTMR6	Q9Y217	621 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	TTLL1	O95922	423 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	ZSCAN22	P10073	491 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-223	ENST00000479656	IFNAR1	P17181	557 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	SSRP1	Q08945	709 aa	Known RBP	13.06	□□□□□ -0.32
APTX-223	ENST00000479656	NFKBIB	Q15653	356 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	CTCFL	Q8NI51	663 aa	Predicted RBP	13.06	□□□□□ -0.32
APTX-223	ENST00000479656	SLC26A6	Q9BXS9	759 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	ADARB2	Q9NS39	739 aa	Known RBP	13.06	□□□□□ -0.32
APTX-223	ENST00000479656	RBM28	Q9NW13	759 aa	Known RBP	13.06	□□□□□ -0.32
APTX-223	ENST00000479656	KIF3A	Q9Y496	699 aa		13.06	□□□□□ -0.32
APTX-223	ENST00000479656	UBE2Q2L	H0YL09	131 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	PLEKHA8P1	O95397	391 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	GUCY1A2	P33402	732 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	ATP2B2	Q01814	1243 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	SEPT2	Q15019	361 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	PRAMEF18	Q5VWM3	479 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	NBPF11	Q86T75	865 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	CABP5	Q9NP86	173 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	GGA3	Q9NZ52	723 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	MYH8	P13535	1937 aa		13.05	□□□□□ -0.32
APTX-223	ENST00000479656	GLTPD2	A6NH11	291 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656		H3BQV1	296 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	FMNL1	O95466	1100 aa	Predicted RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	GH2	P01242	217 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	PDIA4	P13667	645 aa	Known RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	MAP3K10	Q02779	954 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	IFFO2	Q5TF58	517 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	TMEM179	Q6ZVK1	233 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	CDC37L1	Q7L3B6	337 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	LRRC47	Q8N1G4	583 aa	Known RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	STAG2	Q8N3U4	1231 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	SRBD1	Q8N5C6	995 aa	Known RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	CHAMP1	Q96JM3	812 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	MAP3K14	Q99558	947 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	KANSL2	Q9H9L4	492 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	F13A1	P00488	732 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	EEF2	P13639	858 aa	Known RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	GUCY1B3	Q02153	619 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	FUT2	Q10981	343 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	GRM4	Q14833	912 aa		13.04	□□□□□ -0.32
APTX-223	ENST00000479656	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.04	□□□□□ -0.32
APTX-223	ENST00000479656	RASGRP2	Q7LDG7	609 aa		13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms