RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 KIFAP3Q92845 792 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 IMPACTQ9P2X3 320 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 NCAPGQ9BPX3 1015 aa9.79□□□□□ -0.84
SYNE1-224ENST00000478916 H7C1D1 291 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 KRT24Q2M2I5 525 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 RILPL1Q5EBL4 403 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 IQUBQ8NA54 791 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 HAUS8Q9BT25 410 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 SEPT10Q9P0V9 454 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 SPECC1L-ADORA2AF8WAN1 911 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 SPOPO43791 374 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 ATL3Q6DD88 541 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 CHST3Q7LGC8 479 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 SRGAP1Q7Z6B7 1085 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 CXorf38Q8TB03 319 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 PLCD1P51178 756 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 SLC8A3P57103 927 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 HSP90AA5PQ58FG0 334 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 SV2BQ7L1I2 683 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 STAG1Q8WVM7 1258 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 ARMT1Q9H993 441 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 PPIP5K2O43314 1243 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 DEXIO95424 95 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 DLGAP5Q15398 846 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 CARD14Q9BXL6 1004 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 MAPKBP1O60336 1514 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 INPP1P49441 399 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 RASIP1Q5U651 963 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 DENND2CQ68D51 928 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 RILPQ96NA2 401 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 NOX5Q96PH1 765 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 LZTS2Q9BRK4 669 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 TROVE2P10155 538 aaKnown RBP eCLIP9.78□□□□□ -0.84
SYNE1-224ENST00000478916 RASA3Q14644 834 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 IGSF22Q8N9C0 903 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 APPBP2Q92624 585 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 EXOC7Q9UPT5 735 aa9.78□□□□□ -0.84
SYNE1-224ENST00000478916 ELP1O95163 1332 aa9.77□□□□□ -0.84
SYNE1-224ENST00000478916 AOX1Q06278 1338 aa9.77□□□□□ -0.84
SYNE1-224ENST00000478916 RAPGEF1Q13905 1077 aa9.77□□□□□ -0.84
SYNE1-224ENST00000478916 SNCBQ16143 134 aa9.77□□□□□ -0.84
SYNE1-224ENST00000478916 CDAN1Q8IWY9 1227 aa9.77□□□□□ -0.84
SYNE1-224ENST00000478916 RASEFQ8IZ41 740 aa9.77□□□□□ -0.84
SYNE1-224ENST00000478916 SLC5A4Q9NY91 659 aa9.77□□□□□ -0.84
SYNE1-224ENST00000478916 IRX5P78411 483 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 WDR44Q5JSH3 913 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 PKD2L1Q9P0L9 805 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 AK2P54819 239 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 SMC5Q8IY18 1101 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 KIFC2Q96AC6 838 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 MRRFQ96E11 262 aaKnown RBP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 FNBP1Q96RU3 617 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 AS3MTQ9HBK9 375 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 DBN1Q16643 649 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 LETM2Q2VYF4 491 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 DPY19L2Q6NUT2 758 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 ZKSCAN3Q9BRR0 538 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 PPP1R9AQ9ULJ8 1098 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 IBTKQ9P2D0 1353 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 CCT6AP40227 531 aaKnown RBP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 SLC1A4P43007 532 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 GPR162Q16538 588 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 AATFQ9NY61 560 aaKnown RBP eCLIP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 TSKSQ9UJT2 592 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 STRN3Q13033 797 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 DNAJC10Q8IXB1 793 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 NUP58Q9BVL2 599 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 AZI2Q9H6S1 392 aa9.77□□□□□ -0.85
SYNE1-224ENST00000478916 PPANQ9NQ55 473 aaKnown RBP9.77□□□□□ -0.85
SYNE1-224ENST00000478916 STK10O94804 968 aaKnown RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 EPB41P11171 864 aaKnown RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 CHMLP26374 656 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 EAPPQ56P03 285 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 SPATA5Q8NB90 893 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 PARP2Q9UGN5 583 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 DISP1Q96F81 1524 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 ADGRL2O95490 1459 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 GOLGA8KD6RF30 607 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 HAUS7Q99871 368 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 A1BGP04217 495 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 FCHSD1Q86WN1 690 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 SECISBP2LQ93073 1101 aaKnown RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 NOC4LQ9BVI4 516 aaKnown RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 EIF2AQ9BY44 585 aaKnown RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 RRAGDQ9NQL2 400 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 ZBTB40Q9NUA8 1239 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 CSADQ9Y600 493 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 M0QZ92 97 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 TNFAIP3P21580 790 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 GCKRQ14397 625 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 DCAF17Q5H9S7 520 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 INTS4Q96HW7 963 aaKnown RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 TRPC5Q9UL62 973 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-224ENST00000478916 YEATS2Q9ULM3 1422 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 RXRAP19793 462 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 PPP2R5BQ15173 497 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 ASIC2Q16515 512 aa9.76□□□□□ -0.85
SYNE1-224ENST00000478916 ZNF772Q68DY9 489 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms