RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 KRT2P35908 639 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 TMED8Q6PL24 325 aaPredicted RBP20.63■□□□□ 0.89
CCM2-209ENST00000477605 MNS1Q8NEH6 495 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 PHF20Q9BVI0 1012 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 RAI14Q9P0K7 980 aa20.63■□□□□ 0.89
CCM2-209ENST00000477605 TNKSO95271 1327 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 A0A1B0GTH6 734 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 SLFN14P0C7P3 912 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 CHRNDQ07001 517 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 SH3RF1Q7Z6J0 888 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 PANX2Q96RD6 677 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 CDCA7Q9BWT1 371 aaPredicted RBP20.62■□□□□ 0.89
CCM2-209ENST00000477605 BRIP1Q9BX63 1249 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 CHD4Q14839 1912 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 CAMTA2O94983 1202 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 FGRP09769 529 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 SPATA1Q5VX52 437 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 DEFB132Q7Z7B7 95 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 CATIPQ7Z7H3 387 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 MIGA1Q8NAN2 632 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 OXER1Q8TDS5 423 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 SYTL4Q96C24 671 aaPredicted RBP20.62■□□□□ 0.89
CCM2-209ENST00000477605 ZSCAN10Q96SZ4 725 aaPredicted RBP20.62■□□□□ 0.89
CCM2-209ENST00000477605 NAA15Q9BXJ9 866 aaKnown RBP20.62■□□□□ 0.89
CCM2-209ENST00000477605 BRMS1Q9HCU9 246 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 PARP3Q9Y6F1 533 aa20.62■□□□□ 0.89
CCM2-209ENST00000477605 SNAP23O00161 211 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 ATP8B1O43520 1251 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 TADA3O75528 432 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 NTSR2O95665 410 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 FUT2Q10981 343 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 SF3B2Q13435 895 aaKnown RBP20.61■□□□□ 0.89
CCM2-209ENST00000477605 ARHGAP29Q52LW3 1261 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 GSDMAQ96QA5 445 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 CTAGE1Q96RT6 745 aa20.61■□□□□ 0.89
CCM2-209ENST00000477605 PYM1Q9BRP8 204 aaKnown RBP20.61■□□□□ 0.89
CCM2-209ENST00000477605 URI1O94763 535 aaPredicted RBP20.6■□□□□ 0.89
CCM2-209ENST00000477605 CASQ1P31415 396 aa20.6■□□□□ 0.89
CCM2-209ENST00000477605 PKN1Q16512 942 aa20.6■□□□□ 0.89
CCM2-209ENST00000477605 PDILTQ8N807 584 aa20.6■□□□□ 0.89
CCM2-209ENST00000477605 ZNF446Q9NWS9 450 aa20.6■□□□□ 0.89
CCM2-209ENST00000477605 DDAH1O94760 285 aa20.6■□□□□ 0.89
CCM2-209ENST00000477605 UBE4AQ14139 1066 aa20.6■□□□□ 0.89
CCM2-209ENST00000477605 CCDC82Q8N4S0 544 aa20.6■□□□□ 0.89
CCM2-209ENST00000477605 MAP3K9P80192 1104 aa20.59■□□□□ 0.89
CCM2-209ENST00000477605 FAM196AQ6ZSG2 479 aa20.59■□□□□ 0.89
CCM2-209ENST00000477605 IQCA1Q86XH1 822 aa20.59■□□□□ 0.89
CCM2-209ENST00000477605 MED15Q96RN5 788 aa20.59■□□□□ 0.89
CCM2-209ENST00000477605 RIOK1Q9BRS2 568 aaKnown RBP20.59■□□□□ 0.89
CCM2-209ENST00000477605 MINDY4BA8MYZ0 360 aa20.58■□□□□ 0.89
CCM2-209ENST00000477605 AKR1B15C9JRZ8 316 aaPredicted RBP20.58■□□□□ 0.89
CCM2-209ENST00000477605 CRKLP46109 303 aaKnown RBP20.58■□□□□ 0.89
CCM2-209ENST00000477605 CLCN6P51797 869 aa20.58■□□□□ 0.89
CCM2-209ENST00000477605 TERF2Q15554 542 aa20.58■□□□□ 0.89
CCM2-209ENST00000477605 ENAHQ8N8S7 591 aaPredicted RBP20.58■□□□□ 0.89
CCM2-209ENST00000477605 WNK3Q9BYP7 1800 aa20.58■□□□□ 0.89
CCM2-209ENST00000477605 IFIT1BQ5T764 474 aaKnown RBP20.58■□□□□ 0.88
CCM2-209ENST00000477605 CMTR1Q8N1G2 835 aaKnown RBP20.58■□□□□ 0.88
CCM2-209ENST00000477605 PAGE5Q96GU1 130 aa20.58■□□□□ 0.88
CCM2-209ENST00000477605 SAMSN1Q9NSI8 373 aaKnown RBP20.58■□□□□ 0.88
CCM2-209ENST00000477605 CUL4BQ13620 913 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 TMCO3Q6UWJ1 677 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 LRRN4CLQ8ND94 238 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 ZHX1Q9UKY1 873 aaPredicted RBP20.57■□□□□ 0.88
CCM2-209ENST00000477605 NIP7Q9Y221 180 aaKnown RBP eCLIP20.57■□□□□ 0.88
CCM2-209ENST00000477605 TRAPPC10P48553 1259 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 GNG11P61952 73 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 GOLGA8FQ08AF8 430 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 GOLGA8DPQ0D2H9 430 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 DPYDQ12882 1025 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 ZNF827Q17R98 1081 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 FILIP1LQ4L180 1135 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 CDKAL1Q5VV42 579 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 USP49Q70CQ1 688 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 TRMT44Q8IYL2 757 aaKnown RBP20.57■□□□□ 0.88
CCM2-209ENST00000477605 GRAMD1CQ8IYS0 662 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 DHX58Q96C10 678 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 ZNF652Q9Y2D9 606 aa20.57■□□□□ 0.88
CCM2-209ENST00000477605 NPHP1O15259 732 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 ZRANB2O95218 330 aaKnown RBP eCLIP20.56■□□□□ 0.88
CCM2-209ENST00000477605 ATP2B1P20020 1258 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 DDB1Q16531 1140 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 ZNF771Q7L3S4 317 aaPredicted RBP20.56■□□□□ 0.88
CCM2-209ENST00000477605 APTXQ7Z2E3 356 aaKnown RBP20.56■□□□□ 0.88
CCM2-209ENST00000477605 ADGRA1Q86SQ6 560 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 GPR161Q8N6U8 529 aaKnown RBP20.56■□□□□ 0.88
CCM2-209ENST00000477605 SDR42E1Q8WUS8 393 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 TNFRSF25Q93038 417 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 CCDC51Q96ER9 411 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 CARD6Q9BX69 1037 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 VPS54Q9P1Q0 977 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 FHOD1Q9Y613 1164 aa20.56■□□□□ 0.88
CCM2-209ENST00000477605 FANCGO15287 622 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 CCDC175P0C221 793 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 ATP6V1AP38606 617 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 PBX1P40424 430 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 NT5C2P49902 561 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 ADKP55263 362 aaKnown RBP20.55■□□□□ 0.88
CCM2-209ENST00000477605 TROAPQ12815 778 aa20.55■□□□□ 0.88
CCM2-209ENST00000477605 TUBB2AQ13885 445 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms