RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 SH3D19Q5HYK7 790 aa11.56□□□□□ -0.56
HDAC3-208ENST00000476739 FASTKD5Q7L8L6 764 aaKnown RBP11.56□□□□□ -0.56
HDAC3-208ENST00000476739 NKX2-3Q8TAU0 364 aa11.56□□□□□ -0.56
HDAC3-208ENST00000476739 TBC1D2Q9BYX2 928 aa11.56□□□□□ -0.56
HDAC3-208ENST00000476739 EMILIN3Q9NT22 766 aa11.56□□□□□ -0.56
HDAC3-208ENST00000476739 GREB1LQ9C091 1923 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-208ENST00000476739 HAND2P61296 217 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 KIAA1755Q5JYT7 1200 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 ERICH6BQ5W0A0 696 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 TMEM179Q6ZVK1 233 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 PROCA1Q8NCQ7 364 aaPredicted RBP11.55□□□□□ -0.56
HDAC3-208ENST00000476739 CCDC17Q96LX7 622 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 NBPF3Q9H094 633 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 MKNK2Q9HBH9 465 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 ZFYVE28Q9HCC9 887 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 ZCCHC17Q9NP64 241 aaKnown RBP11.55□□□□□ -0.56
HDAC3-208ENST00000476739 CPA4Q9UI42 421 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 TAOK2Q9UL54 1235 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 AGTPBP1Q9UPW5 1226 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 ADGRA2Q96PE1 1338 aa11.55□□□□□ -0.56
HDAC3-208ENST00000476739 ZSWIM8A7E2V4 1837 aa11.54□□□□□ -0.56
HDAC3-208ENST00000476739 C19orf81C9J6K1 198 aa11.54□□□□□ -0.56
HDAC3-208ENST00000476739 TLR2O60603 784 aa11.54□□□□□ -0.56
HDAC3-208ENST00000476739 NOM1Q5C9Z4 860 aaKnown RBP11.54□□□□□ -0.56
HDAC3-208ENST00000476739 FAM47AQ5JRC9 791 aa11.54□□□□□ -0.56
HDAC3-208ENST00000476739 ANAPC4Q9UJX5 808 aa11.54□□□□□ -0.56
HDAC3-208ENST00000476739 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.54□□□□□ -0.56
HDAC3-208ENST00000476739 ZMYM6O95789 1325 aa11.54□□□□□ -0.56
HDAC3-208ENST00000476739 IGKV6D-41A0A0C4DH26 115 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 SGSM2O43147 1006 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 PEX10O60683 326 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 FKTNO75072 461 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 ECM2O94769 699 aaPredicted RBP11.53□□□□□ -0.56
HDAC3-208ENST00000476739 EEF2P13639 858 aaKnown RBP11.53□□□□□ -0.56
HDAC3-208ENST00000476739 MFAP1P55081 439 aaKnown RBP11.53□□□□□ -0.56
HDAC3-208ENST00000476739 PTH1RQ03431 593 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 ICA1Q05084 483 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 BMP2KLQ5H9B9 411 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 USP17L2Q6R6M4 530 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 POTEEQ6S8J3 1075 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 C17orf99Q6UX52 265 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 TBC1D10CQ8IV04 446 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 ZNF444Q8N0Y2 327 aaPredicted RBP11.53□□□□□ -0.56
HDAC3-208ENST00000476739 CD99L2Q8TCZ2 262 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 FEZ1Q99689 392 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 DSCC1Q9BVC3 393 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 KIAA1683Q9H0B3 1180 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 TMOD4Q9NZQ9 345 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 SLC45A1Q9Y2W3 748 aa11.53□□□□□ -0.56
HDAC3-208ENST00000476739 FGRP09769 529 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 VCAM1P19320 739 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 CTGFP29279 349 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 TFAP4Q01664 338 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 ATP2B2Q01814 1243 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 SP3Q02447 781 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 PDE4BQ07343 736 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 C12orf42Q96LP6 360 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 PARK7Q99497 189 aaKnown RBP11.52□□□□□ -0.57
HDAC3-208ENST00000476739 ARHGAP39Q9C0H5 1083 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 ASCC2Q9H1I8 757 aaPredicted RBP11.52□□□□□ -0.57
HDAC3-208ENST00000476739 KANSL2Q9H9L4 492 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 TMX2Q9Y320 296 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 RAD50Q92878 1312 aa11.52□□□□□ -0.57
HDAC3-208ENST00000476739 LAMA4Q16363 1823 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 NMT2O60551 498 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 SLC3A2P08195 630 aaKnown RBP11.51□□□□□ -0.57
HDAC3-208ENST00000476739 BCRP11274 1271 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 HOXA7P31268 230 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-208ENST00000476739 USP14P54578 494 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 SPICE1Q8N0Z3 855 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 NEDD1Q8NHV4 660 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 RUFY2Q8WXA3 655 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 CEP95Q96GE4 821 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 P2RX7Q99572 595 aaKnown RBP11.51□□□□□ -0.57
HDAC3-208ENST00000476739 ARHGEF10LQ9HCE6 1279 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 IL17RBQ9NRM6 502 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 PLIN4Q96Q06 1357 aa11.51□□□□□ -0.57
HDAC3-208ENST00000476739 ZNF213O14771 459 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 ORC4O43929 436 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 TSPY3P0CV98 308 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 TSPY8P0CW00 308 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 RRP12Q5JTH9 1297 aaKnown RBP11.5□□□□□ -0.57
HDAC3-208ENST00000476739 AKNAD1Q5T1N1 836 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 CATSPERGQ6ZRH7 1159 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 ANKRD13CQ8N6S4 541 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 SMCR8Q8TEV9 937 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-208ENST00000476739 STAG1Q8WVM7 1258 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 ESYT1Q9BSJ8 1104 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 ANP32EQ9BTT0 268 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 MCOLN1Q9GZU1 580 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 RPAP3Q9H6T3 665 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-208ENST00000476739 ZNF287Q9HBT7 754 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 TXNRD2Q9NNW7 524 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 MTMR4Q9NYA4 1195 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 CLIP2Q9UDT6 1046 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 PNMA3Q9UL41 463 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 TAF6LQ9Y6J9 622 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 NEDD4P46934 1319 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 MYH4Q9Y623 1939 aa11.5□□□□□ -0.57
HDAC3-208ENST00000476739 RLFQ13129 1914 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms