RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 RBPJLQ9UBG7 517 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 GJD2Q9UKL4 321 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 SLC4A4Q9Y6R1 1079 aa14.5□□□□□ -0.09
SYNE1-223ENST00000476519 GLRX3O76003 335 aaKnown RBP14.49□□□□□ -0.09
SYNE1-223ENST00000476519 MYCP01106 439 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-223ENST00000476519 CHGBP05060 677 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 CYP2D6P10635 497 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 HDAC1Q13547 482 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-223ENST00000476519 SEPT2Q15019 361 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 MTFR1Q15390 333 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 CATSPERGQ6ZRH7 1159 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 GCC1Q96CN9 775 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 CRBNQ96SW2 442 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 ZBTB47Q9UFB7 747 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-223ENST00000476519 RABGAP1Q9Y3P9 1069 aa14.49□□□□□ -0.09
SYNE1-223ENST00000476519 MYO5AQ9Y4I1 1855 aaKnown RBP14.48□□□□□ -0.09
SYNE1-223ENST00000476519 PHIPQ8WWQ0 1821 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 MPHOSPH10O00566 681 aaKnown RBP14.48□□□□□ -0.09
SYNE1-223ENST00000476519 CCL5P13501 91 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 CDK8P49336 464 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 APPBP2Q92624 585 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 DYNLL2Q96FJ2 89 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 YTHDC1Q96MU7 727 aaKnown RBP14.48□□□□□ -0.09
SYNE1-223ENST00000476519 RNF208Q9H0X6 261 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 TXNRD2Q9NNW7 524 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 HOXC10Q9NYD6 342 aa14.48□□□□□ -0.09
SYNE1-223ENST00000476519 GNAT2P19087 354 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 VCAM1P19320 739 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 MAPK4P31152 587 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 GJA8P48165 433 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 ERVK-9P63128 1117 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 ERVK-24P63145 666 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 EVX2Q03828 476 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 Q3C1V9 767 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 SBK1Q52WX2 424 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 ANKRD45Q5TZF3 282 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 TSHZ3Q63HK5 1081 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 CTR9Q6PD62 1173 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 LBX2Q6XYB7 198 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 C16orf86Q6ZW13 317 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 CCAR1Q8IX12 1150 aaKnown RBP14.47□□□□□ -0.09
SYNE1-223ENST00000476519 SLC44A5Q8NCS7 719 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 OSBP2Q969R2 916 aa14.47□□□□□ -0.09
SYNE1-223ENST00000476519 SIPA1L1O43166 1804 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 A0A1W2PRG0 241 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 GSG1L2A8MUP6 293 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 INHAP05111 366 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 XRCC5P13010 732 aaKnown RBP14.46□□□□□ -0.09
SYNE1-223ENST00000476519 ELNP15502 786 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 MX1P20591 662 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 CCNA1P78396 465 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 COG2Q14746 738 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 ZYXQ15942 572 aaKnown RBP14.46□□□□□ -0.09
SYNE1-223ENST00000476519 PI4K2BQ8TCG2 481 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 SOCS4Q8WXH5 440 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 LPAR1Q92633 364 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 SH2D4AQ9H788 454 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 KANSL2Q9H9L4 492 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 ARPP21Q9UBL0 812 aaPredicted RBP14.46□□□□□ -0.09
SYNE1-223ENST00000476519 TMX2Q9Y320 296 aa14.46□□□□□ -0.09
SYNE1-223ENST00000476519 FOCADQ5VW36 1801 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 CYP2D7A0A087X1C5 515 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 AKR1B1P15121 316 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 POTEEQ6S8J3 1075 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 SIAH1Q8IUQ4 282 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 TRMT44Q8IYL2 757 aaKnown RBP14.45□□□□□ -0.1
SYNE1-223ENST00000476519 NUDT12Q9BQG2 462 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 UNC93B1Q9H1C4 597 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 RPAP3Q9H6T3 665 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-223ENST00000476519 ARHGEF10LQ9HCE6 1279 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 PTPRFP10586 1907 aa14.45□□□□□ -0.1
SYNE1-223ENST00000476519 PATL2C9JE40 543 aaKnown RBP14.44□□□□□ -0.1
SYNE1-223ENST00000476519 GPAA1O43292 621 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 SGPL1O95470 568 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 HMGCRP04035 888 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 ICA1Q05084 483 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 PLEKHH3Q7Z736 793 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 TICAM2Q86XR7 235 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 OTUD7AQ8TE49 926 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-223ENST00000476519 U2AF1L4Q8WU68 220 aaKnown RBP14.44□□□□□ -0.1
SYNE1-223ENST00000476519 PAGR1Q9BTK6 254 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 ZNF287Q9HBT7 754 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 STAP2Q9UGK3 403 aa14.44□□□□□ -0.1
SYNE1-223ENST00000476519 MYH1P12882 1939 aa14.43□□□□□ -0.1
SYNE1-223ENST00000476519 LOC285556D6RIA3 1793 aa14.43□□□□□ -0.1
SYNE1-223ENST00000476519 GPR142Q7Z601 462 aa14.43□□□□□ -0.1
SYNE1-223ENST00000476519 USP6NLQ92738 828 aa14.43□□□□□ -0.1
SYNE1-223ENST00000476519 NACAP1Q9BZK3 213 aa14.43□□□□□ -0.1
SYNE1-223ENST00000476519 PORCNQ9H237 461 aa14.43□□□□□ -0.1
SYNE1-223ENST00000476519 RWDD1Q9H446 243 aaPredicted RBP14.43□□□□□ -0.1
SYNE1-223ENST00000476519 PAK6Q9NQU5 681 aaPredicted RBP14.43□□□□□ -0.1
SYNE1-223ENST00000476519 CDK5RAP2Q96SN8 1893 aa14.43□□□□□ -0.1
SYNE1-223ENST00000476519 SALL3Q9BXA9 1300 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 SPDYE16A6NNV3 312 aaPredicted RBP14.42□□□□□ -0.1
SYNE1-223ENST00000476519 MINDY4BA8MYZ0 360 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 SMIM22K7EJ46 135 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 PEX10O60683 326 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 CNMDO75829 334 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 APPP05067 770 aa14.42□□□□□ -0.1
SYNE1-223ENST00000476519 CYP2B6P20813 491 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms