RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF532Q9HCE3 1301 aa14.88□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 LAMA3Q16787 3333 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 MAGEB6P1A0A0J9YX57 407 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 HMMRO75330 724 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 TFRCP02786 760 aaKnown RBP14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 ATP5JP18859 108 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 MAPK4P31152 587 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 ABCB5Q2M3G0 1257 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 ANKLE1Q8NAG6 615 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 ACER1Q8TDN7 264 aa14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 DCP1AQ9NPI6 582 aaPredicted RBP14.87□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L15C9J2P7 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L13C9JLJ4 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L11C9JVI0 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L18D6R9N7 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L22D6RA61 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L17D6RBQ6 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L19D6RCP7 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L20D6RJB6 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 GOLIM4O00461 696 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP14P54578 494 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 USP17L24Q0WX57 530 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 GPR142Q7Z601 462 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 EDC3Q96F86 508 aaKnown RBP14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 NUDT12Q9BQG2 462 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CRNKL1Q9BZJ0 848 aaKnown RBP14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 TAOK2Q9UL54 1235 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 OGDHLQ9ULD0 1010 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 RABGAP1Q9Y3P9 1069 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 MYH7P12883 1935 aa14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 BAZ2AQ9UIF9 1905 aaKnown RBP14.86□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 IGHA2P01877 340 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 IFIT2P09913 472 aaKnown RBP14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 VCAM1P19320 739 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 ADD2P35612 726 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 PDE3AQ14432 1141 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 RAB3GAP1Q15042 981 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 LCORLQ8N3X6 602 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 SOCS4Q8WXH5 440 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 PAWRQ96IZ0 340 aaKnown RBP14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 HAUS7Q99871 368 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 HMX1Q9NP08 348 aaPredicted RBP14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 RBM27Q9P2N5 1060 aaKnown RBP14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 RCAN3Q9UKA8 241 aa14.85□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 A0A1W2PRG0 241 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 POLR3DP05423 398 aaPredicted RBP14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CYP2B6P20813 491 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 SEPT2Q15019 361 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 SLFNL1Q499Z3 407 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 C20orf194Q5TEA3 1177 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CHRDL2Q6WN34 429 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 PLEKHH3Q7Z736 793 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 SIAH1Q8IUQ4 282 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 TRMT44Q8IYL2 757 aaKnown RBP14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 DIS3LQ8TF46 1054 aaKnown RBP14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 SDR42E1Q8WUS8 393 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CHMP4BQ9H444 224 aaKnown RBP14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 CABP5Q9NP86 173 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 PAG1Q9NWQ8 432 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 MCM9Q9NXL9 1143 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 NR2E3Q9Y5X4 410 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 DNAH12Q6ZR08 3092 aa14.84□□□□□ -0.03
MSH5-SAPCD1-205ENST00000476085 APBB1O00213 710 aa14.83□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CACNB2Q08289 660 aaPredicted RBP14.83□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 NECAB2Q7Z6G3 386 aa14.83□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 DNAJC2Q99543 621 aaKnown RBP14.83□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 BOLA2Q9H3K6 86 aa14.83□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 BTBD7Q9P203 1132 aa14.83□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 MYH8P13535 1937 aa14.83□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 SPDYE16A6NNV3 312 aaPredicted RBP14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 PRKAB2O43741 272 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CHGBP05060 677 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 HOXC6P09630 235 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CYP2D6P10635 497 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 PRKAR2AP13861 404 aaKnown RBP14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 UBE3CQ15386 1083 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 ZYXQ15942 572 aaKnown RBP14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 CCL14Q16627 93 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 KIAA1755Q5JYT7 1200 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 LHX8Q68G74 356 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 PAGR1Q9BTK6 254 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 ARMT1Q9H993 441 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 ATP8A2Q9NTI2 1148 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 PARP14Q460N5 1801 aa14.82□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 SMIM22K7EJ46 135 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 EVI5O60447 810 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 PTPREP23469 700 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 RGS2P41220 211 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 MAP2K5Q13163 448 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 C12orf60Q5U649 245 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 SLC44A5Q8NCS7 719 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 DYNLL2Q96FJ2 89 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 FEZ1Q99689 392 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 APBA2Q99767 749 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 RPAP3Q9H6T3 665 aaPredicted RBP14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 SWAP70Q9UH65 585 aa14.81□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 A0A0G2JMZ2 1700 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 ZNFX1Q9P2E3 1918 aaKnown RBP14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPC1 479 aa14.8□□□□□ -0.04
MSH5-SAPCD1-205ENST00000476085 SLC15A5A6NIM6 579 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms