RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 NPR3P17342 541 aa5.53□□□□□ -1.52
VPS13D-206ENST00000476045 ZAP70P43403 619 aa5.53□□□□□ -1.52
VPS13D-206ENST00000476045 IRX6P78412 446 aaPredicted RBP5.53□□□□□ -1.52
VPS13D-206ENST00000476045 HNRNPUQ00839 825 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS13D-206ENST00000476045 PLAURQ03405 335 aa5.53□□□□□ -1.52
VPS13D-206ENST00000476045 TRIM28Q13263 835 aaKnown RBP5.53□□□□□ -1.52
VPS13D-206ENST00000476045 CC2D1BQ5T0F9 858 aaKnown RBP5.53□□□□□ -1.52
VPS13D-206ENST00000476045 NPM2Q86SE8 214 aaKnown RBP5.53□□□□□ -1.52
VPS13D-206ENST00000476045 OR13H1Q8NG92 308 aa5.53□□□□□ -1.52
VPS13D-206ENST00000476045 MKNK1Q9BUB5 465 aa5.53□□□□□ -1.52
VPS13D-206ENST00000476045 NARFQ9UHQ1 456 aa5.53□□□□□ -1.52
VPS13D-206ENST00000476045 USP20Q9Y2K6 914 aa5.53□□□□□ -1.52
VPS13D-206ENST00000476045 RIC1Q4ADV7 1423 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 C9orf172C9J069 976 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 FAM229AH3BQW9 127 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 POLRMTO00411 1230 aaKnown RBP5.52□□□□□ -1.53
VPS13D-206ENST00000476045 U2SURPO15042 1029 aaKnown RBP5.52□□□□□ -1.53
VPS13D-206ENST00000476045 NEFMP07197 916 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 HMOX1P09601 288 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 CYP19A1P11511 503 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-206ENST00000476045 GATA4P43694 442 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 TBC1D8BQ0IIM8 1120 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 MBTPS1Q14703 1052 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 MTHFSDQ2M296 383 aaKnown RBP5.52□□□□□ -1.53
VPS13D-206ENST00000476045 NKAPLQ5M9Q1 402 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 KRT25Q7Z3Z0 450 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 DNAJC10Q8IXB1 793 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 NUDT8Q8WV74 236 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 LENG1Q96BZ8 264 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-206ENST00000476045 FMNL2Q96PY5 1086 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 SSBP4Q9BWG4 385 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-206ENST00000476045 PIM2Q9P1W9 311 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 SEPT3Q9UH03 358 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 SCN4AP35499 1836 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 IBTKQ9P2D0 1353 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-206ENST00000476045 LAMB2P55268 1798 aa5.52□□□□□ -1.53
VPS13D-206ENST00000476045 KDM2BQ8NHM5 1336 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 ZBTB39O15060 712 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 HTATSF1O43719 755 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 PSAPP07602 524 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 PDIA4P13667 645 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 CPB1P15086 417 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 PRKAR2BP31323 418 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 IL6STP40189 918 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 RAC1P63000 192 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 DDR1Q08345 913 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 CNGB1Q14028 1251 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 RSPO4Q2I0M5 234 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 CCDC184Q52MB2 194 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 DALRD3Q5D0E6 543 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 PHLDB3Q6NSJ2 640 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 INTS5Q6P9B9 1019 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 ZNF790Q6PG37 636 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 FBXO11Q86XK2 927 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 CMTR1Q8N1G2 835 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 CACTIN-AS1Q8N1I8 211 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 PIK3R5Q8WYR1 880 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 RTF1Q92541 710 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 PNNQ9H307 717 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 SRA1Q9HD15 236 aaKnown RBP5.51□□□□□ -1.53
VPS13D-206ENST00000476045 ZNF652Q9Y2D9 606 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 ZBTB1Q9Y2K1 713 aa5.51□□□□□ -1.53
VPS13D-206ENST00000476045 DPEP1P16444 411 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 EIF5P55010 431 aaKnown RBP5.5□□□□□ -1.53
VPS13D-206ENST00000476045 NRG1Q02297 640 aaPredicted RBP5.5□□□□□ -1.53
VPS13D-206ENST00000476045 NAA30Q147X3 362 aaPredicted RBP5.5□□□□□ -1.53
VPS13D-206ENST00000476045 GRIK4Q16099 956 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 SOGA3Q5TF21 947 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 USPL1Q5W0Q7 1092 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 PDE12Q6L8Q7 609 aaKnown RBP5.5□□□□□ -1.53
VPS13D-206ENST00000476045 ELMSAN1Q6PJG2 1045 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 XKR5Q6UX68 686 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 FAM9BQ8IZU0 186 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 PNISRQ8TF01 805 aaKnown RBP5.5□□□□□ -1.53
VPS13D-206ENST00000476045 SMG9Q9H0W8 520 aaKnown RBP5.5□□□□□ -1.53
VPS13D-206ENST00000476045 TPSG1Q9NRR2 321 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 USTQ9Y2C2 406 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 DDX60Q8IY21 1712 aaKnown RBP5.5□□□□□ -1.53
VPS13D-206ENST00000476045 PCNTO95613 3336 aa5.5□□□□□ -1.53
VPS13D-206ENST00000476045 MAPK8IP3Q9UPT6 1336 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 SLX4Q8IY92 1834 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 DEAF1O75398 565 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-206ENST00000476045 FURINP09958 794 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 U2AF1L5P0DN76 240 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-206ENST00000476045 HSPA6P17066 643 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 PPP2R1AP30153 589 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 TM4SF1P30408 202 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 ST5P78524 1137 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 U2AF1Q01081 240 aaKnown RBP eCLIP5.49□□□□□ -1.53
VPS13D-206ENST00000476045 MLLT1Q03111 559 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-206ENST00000476045 SLC39A6Q13433 755 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 NFIXQ14938 502 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 CLEC4GQ6UXB4 293 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 TXNRD3Q86VQ6 643 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 CNBD1Q8NA66 436 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 PLD4Q96BZ4 506 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 ZNF496Q96IT1 587 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-206ENST00000476045 IGFLR1Q9H665 355 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 LGR6Q9HBX8 967 aa5.49□□□□□ -1.53
VPS13D-206ENST00000476045 SRP68Q9UHB9 627 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms