RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SIAH1Q8IUQ4 282 aa17.02■□□□□ 0.32
UPF3A-204ENST00000475218 ATP8A2Q9NTI2 1148 aa17.02■□□□□ 0.32
UPF3A-204ENST00000475218 MYH8P13535 1937 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 RLFQ13129 1914 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 SALL3Q9BXA9 1300 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 C12orf60Q5U649 245 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 KBTBD3Q8NAB2 608 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 PI4K2BQ8TCG2 481 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 PXYLP1Q8TE99 480 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 UNC93B1Q9H1C4 597 aa17.02■□□□□ 0.31
UPF3A-204ENST00000475218 CNMDO75829 334 aa17.01■□□□□ 0.31
UPF3A-204ENST00000475218 INHAP05111 366 aa17.01■□□□□ 0.31
UPF3A-204ENST00000475218 VCAM1P19320 739 aa17.01■□□□□ 0.31
UPF3A-204ENST00000475218 KIAA1755Q5JYT7 1200 aa17.01■□□□□ 0.31
UPF3A-204ENST00000475218 UBE2Q1Q7Z7E8 422 aa17.01■□□□□ 0.31
UPF3A-204ENST00000475218 CLEC10AQ8IUN9 316 aa17.01■□□□□ 0.31
UPF3A-204ENST00000475218 OSBP2Q969R2 916 aa17.01■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L12C9JPN9 530 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L21D6R901 530 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 GJB1P08034 283 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 AKR1B1P15121 316 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 COA7Q96BR5 231 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 YTHDC1Q96MU7 727 aaKnown RBP17■□□□□ 0.31
UPF3A-204ENST00000475218 STRBPQ96SI9 672 aaKnown RBP17■□□□□ 0.31
UPF3A-204ENST00000475218 FEZ1Q99689 392 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 PORCNQ9H237 461 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 GJA8P48165 433 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 CTR9Q6PD62 1173 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 CATSPERGQ6ZRH7 1159 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 RNF208Q9H0X6 261 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 CABP5Q9NP86 173 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 SLC4A4Q9Y6R1 1079 aa17■□□□□ 0.31
UPF3A-204ENST00000475218 ERVK-9P63128 1117 aa16.99■□□□□ 0.31
UPF3A-204ENST00000475218 ERVK-24P63145 666 aa16.99■□□□□ 0.31
UPF3A-204ENST00000475218 GPRC5AQ8NFJ5 357 aa16.99■□□□□ 0.31
UPF3A-204ENST00000475218 BIN2Q9UBW5 565 aaPredicted RBP16.99■□□□□ 0.31
UPF3A-204ENST00000475218 GREB1LQ9C091 1923 aaPredicted RBP16.98■□□□□ 0.31
UPF3A-204ENST00000475218 GSG1L2A8MUP6 293 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L15C9J2P7 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L13C9JLJ4 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L11C9JVI0 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L18D6R9N7 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L22D6RA61 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L17D6RBQ6 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L19D6RCP7 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L20D6RJB6 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 CDK8P49336 464 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 USP17L24Q0WX57 530 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 TRIM32Q13049 653 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 ZSCAN25Q6NSZ9 544 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 C16orf86Q6ZW13 317 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 SWAP70Q9UH65 585 aa16.98■□□□□ 0.31
UPF3A-204ENST00000475218 A0A0G2JMZ2 1700 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 MPHOSPH10O00566 681 aaKnown RBP16.97■□□□□ 0.31
UPF3A-204ENST00000475218 USP14P54578 494 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 UBXN2AP68543 259 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 TMEM179Q6ZVK1 233 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 APPBP2Q92624 585 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 USP6NLQ92738 828 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 PAGR1Q9BTK6 254 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 RPAP3Q9H6T3 665 aaPredicted RBP16.97■□□□□ 0.31
UPF3A-204ENST00000475218 EPB41L4AQ9HCS5 686 aaPredicted RBP16.97■□□□□ 0.31
UPF3A-204ENST00000475218 PAK6Q9NQU5 681 aaPredicted RBP16.97■□□□□ 0.31
UPF3A-204ENST00000475218 BTBD7Q9P203 1132 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 PARP14Q460N5 1801 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 TTC41PQ6P2S7 1318 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 M0R2C6 588 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 RNF113AO15541 343 aaKnown RBP16.97■□□□□ 0.31
UPF3A-204ENST00000475218 LBX2Q6XYB7 198 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 GPATCH3Q96I76 525 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.97■□□□□ 0.31
UPF3A-204ENST00000475218 TAOK2Q9UL54 1235 aa16.97■□□□□ 0.31
UPF3A-204ENST00000475218 SPDYE16A6NNV3 312 aaPredicted RBP16.96■□□□□ 0.31
UPF3A-204ENST00000475218 U2AF1L4Q8WU68 220 aaKnown RBP16.96■□□□□ 0.31
UPF3A-204ENST00000475218 TRIB2Q92519 343 aa16.96■□□□□ 0.31
UPF3A-204ENST00000475218 RABGAP1Q9Y3P9 1069 aa16.96■□□□□ 0.31
UPF3A-204ENST00000475218 MORN1Q5T089 497 aa16.95■□□□□ 0.3
UPF3A-204ENST00000475218 SEC62Q99442 399 aaKnown RBP16.95■□□□□ 0.3
UPF3A-204ENST00000475218 GPAA1O43292 621 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 SGPL1O95470 568 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 HDAC1Q13547 482 aaPredicted RBP16.94■□□□□ 0.3
UPF3A-204ENST00000475218 SBK1Q52WX2 424 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 GPR142Q7Z601 462 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 GTF3C2Q8WUA4 911 aaPredicted RBP16.94■□□□□ 0.3
UPF3A-204ENST00000475218 CRISPLD2Q9H0B8 497 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 TMX2Q9Y320 296 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 ROBO3Q96MS0 1386 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 HMGCRP04035 888 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 MX1P20591 662 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 CYP2B6P20813 491 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 MAPK4P31152 587 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 MAP3K21Q5TCX8 1036 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 NKX2-3Q8TAU0 364 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 CCDC17Q96LX7 622 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 DEFB118Q96PH6 123 aa16.94■□□□□ 0.3
UPF3A-204ENST00000475218 FOXP2O15409 715 aa16.93■□□□□ 0.3
UPF3A-204ENST00000475218 GLRX3O76003 335 aaKnown RBP16.93■□□□□ 0.3
UPF3A-204ENST00000475218 SLC34A2O95436 690 aa16.93■□□□□ 0.3
UPF3A-204ENST00000475218 ICA1Q05084 483 aa16.93■□□□□ 0.3
UPF3A-204ENST00000475218 CCL14Q16627 93 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms