RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 USP17L22D6RA61 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L17D6RBQ6 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L19D6RCP7 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L20D6RJB6 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 MPHOSPH10O00566 681 aaKnown RBP14.35□□□□□ -0.11
SYNE1-221ENST00000472563 GPAA1O43292 621 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 GRK4P32298 578 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 CDK8P49336 464 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 USP17L24Q0WX57 530 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 SBK1Q52WX2 424 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 C16orf86Q6ZW13 317 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 GTF3C2Q8WUA4 911 aaPredicted RBP14.35□□□□□ -0.11
SYNE1-221ENST00000472563 FSD1Q9BTV5 496 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 TMEM106CQ9BVX2 250 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 SIPA1L1O43166 1804 aa14.35□□□□□ -0.11
SYNE1-221ENST00000472563 A0A1W2PRG0 241 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 POTEFA5A3E0 1075 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 SMIM22K7EJ46 135 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 FLT3LGP49771 235 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 PDE1AP54750 535 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 IRF5Q13568 498 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 ZYXQ15942 572 aaKnown RBP14.34□□□□□ -0.11
SYNE1-221ENST00000472563 GPRC5AQ8NFJ5 357 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 COA7Q96BR5 231 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 RBPJLQ9UBG7 517 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 GABRQQ9UN88 632 aa14.34□□□□□ -0.11
SYNE1-221ENST00000472563 SUPT16HQ9Y5B9 1047 aaKnown RBP14.34□□□□□ -0.11
SYNE1-221ENST00000472563 MYO5AQ9Y4I1 1855 aaKnown RBP14.33□□□□□ -0.11
SYNE1-221ENST00000472563 PATL2C9JE40 543 aaKnown RBP14.33□□□□□ -0.12
SYNE1-221ENST00000472563 M0R2C6 588 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 AKR1B1P15121 316 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 VCAM1P19320 739 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 ZMYM1Q5SVZ6 1142 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 CATSPERGQ6ZRH7 1159 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 TICAM2Q86XR7 235 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 SIAH1Q8IUQ4 282 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 SLAIN1Q8ND83 568 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 PXYLP1Q8TE99 480 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 EVI5LQ96CN4 794 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 TXNRD2Q9NNW7 524 aa14.33□□□□□ -0.12
SYNE1-221ENST00000472563 IGHDP01880 384 aa14.32□□□□□ -0.12
SYNE1-221ENST00000472563 POTEEQ6S8J3 1075 aa14.32□□□□□ -0.12
SYNE1-221ENST00000472563 KANSL2Q9H9L4 492 aa14.32□□□□□ -0.12
SYNE1-221ENST00000472563 EPB41L4AQ9HCS5 686 aaPredicted RBP14.32□□□□□ -0.12
SYNE1-221ENST00000472563 RABGAP1Q9Y3P9 1069 aa14.32□□□□□ -0.12
SYNE1-221ENST00000472563 FOCADQ5VW36 1801 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 PHIPQ8WWQ0 1821 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 ADCY3O60266 1144 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 APPP05067 770 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 EN2P19622 333 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-221ENST00000472563 TDO2P48775 406 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 UBXN2AP68543 259 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 NUCB1Q02818 461 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 ICA1Q05084 483 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 LBX2Q6XYB7 198 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 SEC62Q99442 399 aaKnown RBP14.31□□□□□ -0.12
SYNE1-221ENST00000472563 NACAP1Q9BZK3 213 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 LNPKQ9C0E8 428 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 RPAP3Q9H6T3 665 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-221ENST00000472563 SH2D4AQ9H788 454 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 ARHGEF10LQ9HCE6 1279 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 BIN2Q9UBW5 565 aaPredicted RBP14.31□□□□□ -0.12
SYNE1-221ENST00000472563 GJD2Q9UKL4 321 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 TMX2Q9Y320 296 aa14.31□□□□□ -0.12
SYNE1-221ENST00000472563 DDX60LQ5H9U9 1706 aaKnown RBP14.3□□□□□ -0.12
SYNE1-221ENST00000472563 MINDY4BA8MYZ0 360 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 PEX10O60683 326 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 MYCP01106 439 aaPredicted RBP14.3□□□□□ -0.12
SYNE1-221ENST00000472563 MAPK4P31152 587 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 ERVK-9P63128 1117 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 ERVK-24P63145 666 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 MTFR1Q15390 333 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 Q3C1V9 767 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 CHD1LQ86WJ1 897 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 IFNL3Q8IZI9 196 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 LPAR1Q92633 364 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 MKNK2Q9HBH9 465 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 ROBO3Q96MS0 1386 aa14.3□□□□□ -0.12
SYNE1-221ENST00000472563 ELNP15502 786 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 RASA1P20936 1047 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 COG2Q14746 738 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 B4GALNT3Q6L9W6 998 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 CLEC10AQ8IUN9 316 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 PAGR1Q9BTK6 254 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.29□□□□□ -0.12
SYNE1-221ENST00000472563 VCPKMTQ9H867 229 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 ZNF287Q9HBT7 754 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 HOXC10Q9NYD6 342 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 LOC285556D6RIA3 1793 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 CDK5RAP2Q96SN8 1893 aa14.29□□□□□ -0.12
SYNE1-221ENST00000472563 SPDYE16A6NNV3 312 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-221ENST00000472563 CNMDO75829 334 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 GJB1P08034 283 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 CCL5P13501 91 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 EEF2P13639 858 aaKnown RBP14.28□□□□□ -0.12
SYNE1-221ENST00000472563 CENPFP49454 3210 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 CCNA1P78396 465 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 KIAA1755Q5JYT7 1200 aa14.28□□□□□ -0.12
SYNE1-221ENST00000472563 CCAR1Q8IX12 1150 aaKnown RBP14.28□□□□□ -0.12
SYNE1-221ENST00000472563 NKX2-3Q8TAU0 364 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms