RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NOL10Q9BSC4 688 aaKnown RBP22.64■■□□□ 1.21
SHH-205ENST00000472308 ATP11BQ9Y2G3 1177 aa22.64■■□□□ 1.21
SHH-205ENST00000472308 BAG3O95817 575 aa22.63■■□□□ 1.21
SHH-205ENST00000472308 GH2P01242 217 aa22.63■■□□□ 1.21
SHH-205ENST00000472308 CYBAP13498 195 aa22.63■■□□□ 1.21
SHH-205ENST00000472308 CNGA1P29973 690 aa22.63■■□□□ 1.21
SHH-205ENST00000472308 ZYXQ15942 572 aaKnown RBP22.63■■□□□ 1.21
SHH-205ENST00000472308 TRIM34Q9BYJ4 488 aa22.63■■□□□ 1.21
SHH-205ENST00000472308 BTBD7Q9P203 1132 aa22.63■■□□□ 1.21
SHH-205ENST00000472308 SAP30BPQ9UHR5 308 aaKnown RBP22.63■■□□□ 1.21
SHH-205ENST00000472308 USP17L15C9J2P7 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L13C9JLJ4 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L11C9JVI0 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L18D6R9N7 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L22D6RA61 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L17D6RBQ6 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L19D6RCP7 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L20D6RJB6 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 GLRX3O76003 335 aaKnown RBP22.62■■□□□ 1.21
SHH-205ENST00000472308 PLCG2P16885 1265 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 CCNA1P78396 465 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 USP17L24Q0WX57 530 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 GJC2Q5T442 439 aaPredicted RBP22.62■■□□□ 1.21
SHH-205ENST00000472308 WDR78Q5VTH9 848 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 SNRKQ9NRH2 765 aa22.62■■□□□ 1.21
SHH-205ENST00000472308 SMAD3P84022 425 aaKnown RBP22.61■■□□□ 1.21
SHH-205ENST00000472308 ATP2B2Q01814 1243 aa22.61■■□□□ 1.21
SHH-205ENST00000472308 SNX17Q15036 470 aa22.61■■□□□ 1.21
SHH-205ENST00000472308 LBX2Q6XYB7 198 aa22.61■■□□□ 1.21
SHH-205ENST00000472308 SLC39A5Q6ZMH5 540 aa22.61■■□□□ 1.21
SHH-205ENST00000472308 CATSPERGQ6ZRH7 1159 aa22.61■■□□□ 1.21
SHH-205ENST00000472308 BADQ92934 168 aa22.61■■□□□ 1.21
SHH-205ENST00000472308 CDCA7LQ96GN5 454 aa22.61■■□□□ 1.21
SHH-205ENST00000472308 API5Q9BZZ5 524 aaKnown RBP22.61■■□□□ 1.21
SHH-205ENST00000472308 UQCRFS1P1P0C7P4 283 aa22.6■■□□□ 1.21
SHH-205ENST00000472308 VCAM1P19320 739 aa22.6■■□□□ 1.21
SHH-205ENST00000472308 PRDM5Q9NQX1 630 aaPredicted RBP22.6■■□□□ 1.21
SHH-205ENST00000472308 PDLIM7Q9NR12 457 aa22.6■■□□□ 1.21
SHH-205ENST00000472308 TRIM60Q495X7 471 aa22.59■■□□□ 1.21
SHH-205ENST00000472308 TATDN1Q6P1N9 297 aa22.59■■□□□ 1.21
SHH-205ENST00000472308 FEZ1Q99689 392 aa22.59■■□□□ 1.21
SHH-205ENST00000472308 ZNF236Q9UL36 1845 aa22.59■■□□□ 1.21
SHH-205ENST00000472308 TRIM43BA6NCK2 446 aa22.58■■□□□ 1.21
SHH-205ENST00000472308 SPDYE16A6NNV3 312 aaPredicted RBP22.58■■□□□ 1.21
SHH-205ENST00000472308 CYP2E1P05181 493 aaPredicted RBP22.58■■□□□ 1.21
SHH-205ENST00000472308 HLA-DOAP06340 250 aa22.58■■□□□ 1.21
SHH-205ENST00000472308 DYNLL1P63167 89 aaKnown RBP22.58■■□□□ 1.21
SHH-205ENST00000472308 ANO1Q5XXA6 986 aa22.58■■□□□ 1.21
SHH-205ENST00000472308 SH3RF1Q7Z6J0 888 aa22.58■■□□□ 1.21
SHH-205ENST00000472308 ACER1Q8TDN7 264 aa22.58■■□□□ 1.21
SHH-205ENST00000472308 TRIM43Q96BQ3 446 aaPredicted RBP22.58■■□□□ 1.21
SHH-205ENST00000472308 KIAA1683Q9H0B3 1180 aa22.58■■□□□ 1.21
SHH-205ENST00000472308 IVNS1ABPQ9Y6Y0 642 aa22.58■■□□□ 1.21
SHH-205ENST00000472308 GNAI3P08754 354 aa22.57■■□□□ 1.2
SHH-205ENST00000472308 FOSL2P15408 326 aa22.57■■□□□ 1.2
SHH-205ENST00000472308 TRMT2AQ8IZ69 625 aaKnown RBP22.57■■□□□ 1.2
SHH-205ENST00000472308 ARRDC4Q8NCT1 418 aa22.57■■□□□ 1.2
SHH-205ENST00000472308 MYO5AQ9Y4I1 1855 aaKnown RBP22.56■■□□□ 1.2
SHH-205ENST00000472308 PNMA6EA0A0J9YXQ4 647 aa22.56■■□□□ 1.2
SHH-205ENST00000472308 KBTBD13C9JR72 458 aa22.55■■□□□ 1.2
SHH-205ENST00000472308 ITGB8P26012 769 aa22.55■■□□□ 1.2
SHH-205ENST00000472308 ADORA2AP29274 412 aa22.55■■□□□ 1.2
SHH-205ENST00000472308 USP14P54578 494 aa22.55■■□□□ 1.2
SHH-205ENST00000472308 RAB3GAP1Q15042 981 aa22.55■■□□□ 1.2
SHH-205ENST00000472308 OLFML2BQ68BL8 750 aa22.55■■□□□ 1.2
SHH-205ENST00000472308 ATF7IPQ6VMQ6 1270 aa22.55■■□□□ 1.2
SHH-205ENST00000472308 RPAP3Q9H6T3 665 aaPredicted RBP22.55■■□□□ 1.2
SHH-205ENST00000472308 PIH1D3Q9NQM4 214 aaKnown RBP22.55■■□□□ 1.2
SHH-205ENST00000472308 SEPT4O43236 478 aa22.54■■□□□ 1.2
SHH-205ENST00000472308 EPHB4P54760 987 aa22.54■■□□□ 1.2
SHH-205ENST00000472308 USP38Q8NB14 1042 aa22.54■■□□□ 1.2
SHH-205ENST00000472308 DBNDD2Q9BQY9 259 aa22.54■■□□□ 1.2
SHH-205ENST00000472308 MOV10L1Q9BXT6 1211 aaKnown RBP22.54■■□□□ 1.2
SHH-205ENST00000472308 ADCYAP1R1P41586 468 aa22.53■■□□□ 1.2
SHH-205ENST00000472308 TTC39AQ5SRH9 613 aa22.53■■□□□ 1.2
SHH-205ENST00000472308 C1orf53Q5VUE5 145 aa22.53■■□□□ 1.2
SHH-205ENST00000472308 SYMPKQ92797 1274 aaKnown RBP22.53■■□□□ 1.2
SHH-205ENST00000472308 EHD4Q9H223 541 aa22.53■■□□□ 1.2
SHH-205ENST00000472308 A0A0G2JMZ2 1700 aa22.53■■□□□ 1.2
SHH-205ENST00000472308 TMEM265A0A087WTH1 108 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 COBLO75128 1261 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 CT47B1P0C2W7 299 aaPredicted RBP22.52■■□□□ 1.2
SHH-205ENST00000472308 GUCY1A2P33402 732 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 ZAP70P43403 619 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 G3BP1Q13283 466 aaKnown RBP eCLIP22.52■■□□□ 1.2
SHH-205ENST00000472308 LRRC41Q15345 812 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 DPP9Q86TI2 863 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 FERMT2Q96AC1 680 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 SERPINB13Q9UIV8 391 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 MYH1P12882 1939 aa22.52■■□□□ 1.2
SHH-205ENST00000472308 MYCNP04198 464 aaPredicted RBP22.51■■□□□ 1.19
SHH-205ENST00000472308 TLE2Q04725 743 aa22.51■■□□□ 1.19
SHH-205ENST00000472308 ABCB5Q2M3G0 1257 aa22.51■■□□□ 1.19
SHH-205ENST00000472308 CERKLQ49MI3 558 aaPredicted RBP22.51■■□□□ 1.19
SHH-205ENST00000472308 TNNI3KQ59H18 835 aa22.51■■□□□ 1.19
SHH-205ENST00000472308 FAM47AQ5JRC9 791 aa22.51■■□□□ 1.19
SHH-205ENST00000472308 PRAMEF19Q5SWL8 479 aa22.51■■□□□ 1.19
SHH-205ENST00000472308 MIGA1Q8NAN2 632 aa22.51■■□□□ 1.19
SHH-205ENST00000472308 FPGT-TNNI3KV9GXZ4 949 aa22.51■■□□□ 1.19
SHH-205ENST00000472308 CYP7A1P22680 504 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms