RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 RBM17Q96I25 401 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 RIOK1Q9BRS2 568 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 VEZTQ9HBM0 779 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 USP27XA6NNY8 438 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 YEATS4O95619 227 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 KARSQ15046 597 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 WDR66Q8TBY9 1149 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 STAG1Q8WVM7 1258 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 SYMPKQ92797 1274 aaKnown RBP15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 USP40Q9NVE5 1235 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 NFE2L3Q9Y4A8 694 aa15.68■□□□□ 0.1
CCDC88A-211ENST00000471947 WNT7AO00755 349 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 KLRF2D3W0D1 207 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 CLSTN1O94985 981 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 KIF5BP33176 963 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 FANCCQ00597 558 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 PDE4CQ08493 712 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 BARGINQ6ZT62 677 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 CLRN2A0PK11 232 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 TMEM232C9JQI7 657 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 TXKP42681 527 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 CCDC178Q5BJE1 867 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 KCTD1Q719H9 257 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 PARP3Q9Y6F1 533 aa15.67■□□□□ 0.1
CCDC88A-211ENST00000471947 TAL1P17542 331 aaPredicted RBP15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 LIFRP42702 1097 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 DPF2Q92785 391 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 FUCA2Q9BTY2 467 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 VPS16Q9H269 839 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 POLR3EQ9NVU0 708 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 XDHP47989 1333 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 ZNF142P52746 1687 aaPredicted RBP15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 ADAMTS3O15072 1205 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 PTPN14Q15678 1187 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 NTRK3Q16288 839 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 RILPL1Q5EBL4 403 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 ALS2Q96Q42 1657 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 JCADQ9P266 1359 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 GDF11O95390 407 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 CMA1P23946 247 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 CDK5RAP3Q96JB5 506 aa15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 SAMSN1Q9NSI8 373 aaKnown RBP15.66■□□□□ 0.1
CCDC88A-211ENST00000471947 CCNT1O60563 726 aaKnown RBP15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 POSTNQ15063 836 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 USH1GQ495M9 461 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 CCDC112Q8NEF3 446 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 ALDH8A1Q9H2A2 487 aaPredicted RBP15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 POLLQ9UGP5 575 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 SCN11AQ9UI33 1791 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 RIOK3O14730 519 aaKnown RBP15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 ECM2O94769 699 aaPredicted RBP15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 DESI2Q9BSY9 194 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 RTL9Q8NET4 1388 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 GYS1P13807 737 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 TXLNAP40222 546 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 KRBA2Q6ZNG9 492 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 FBXO33Q7Z6M2 555 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 CEP131Q9UPN4 1083 aa15.65■□□□□ 0.1
CCDC88A-211ENST00000471947 SMTNL1A8MU46 457 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 SCG2P13521 617 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 STAT6P42226 847 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 AGXT2Q9BYV1 514 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 TOB1P50616 345 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 AXDND1Q5T1B0 1012 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 DYMQ7RTS9 669 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 PIGSQ96S52 555 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 PKD2L1Q9P0L9 805 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 TBC1D7Q9P0N9 293 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 CTNND2Q9UQB3 1225 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 PHRF1Q9P1Y6 1649 aaKnown RBP15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 DNA2P51530 1060 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 CBX1P83916 185 aa15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 RNF216Q9NWF9 866 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-211ENST00000471947 RAD17O75943 681 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 PPEF1O14829 653 aaPredicted RBP15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 PARP1P09874 1014 aaKnown RBP15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 NLRP12P59046 1061 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 SYT10Q6XYQ8 523 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 CUTAO60888 179 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 URI1O94763 535 aaPredicted RBP15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 CDK8P49336 464 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 MYL5Q02045 173 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 SHROOM1Q2M3G4 852 aaPredicted RBP15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 ENGASEQ8NFI3 743 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 TMEM260Q9NX78 707 aa15.63■□□□□ 0.09
CCDC88A-211ENST00000471947 USP17L5A8MUK1 530 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 TECP42680 631 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 EN1Q05925 392 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 CCDC84Q86UT8 332 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 SGMS1Q86VZ5 419 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 METTL16Q86W50 562 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 DHX40Q8IX18 779 aaKnown RBP15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 FNBP4Q8N3X1 1017 aaPredicted RBP15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 CEP95Q96GE4 821 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 TMEM47Q9BQJ4 181 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 DNAI1Q9UI46 699 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 RFX7Q2KHR2 1363 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 TCP10L2B9ZVM9 353 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 GSTO1P78417 241 aa15.62■□□□□ 0.09
CCDC88A-211ENST00000471947 DDR1Q08345 913 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms