RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 UBE3DQ7Z6J8 389 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 TOP6BLQ8N6T0 577 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 ELMO3Q96BJ8 720 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 DUSP23Q9BVJ7 150 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 ADAM7Q9H2U9 754 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 PICK1Q9NRD5 415 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 PCOLCE2Q9UKZ9 415 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 PCDHA4Q9UN74 947 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 CSADQ9Y600 493 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 AK5Q9Y6K8 562 aa2.67□□□□□ -1.98
UBXN4-207ENST00000471246 PRAMEF27A3QJZ7 478 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 LEFTY1O75610 366 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 GDNFP39905 211 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 DLG4P78352 724 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 PTPN11Q06124 597 aaPredicted RBP2.66□□□□□ -1.98
UBXN4-207ENST00000471246 PSMD2Q13200 908 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 SEPT6Q14141 434 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 WIPI1Q5MNZ9 446 aaPredicted RBP2.66□□□□□ -1.98
UBXN4-207ENST00000471246 MEI1Q5TIA1 1274 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 TTBK2Q6IQ55 1244 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 LRFN4Q6PJG9 635 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.66□□□□□ -1.98
UBXN4-207ENST00000471246 FBXO33Q7Z6M2 555 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 C12orf40Q86WS4 652 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 PHF6Q8IWS0 365 aaKnown RBP eCLIP2.66□□□□□ -1.98
UBXN4-207ENST00000471246 PLPPR2Q96GM1 343 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 FAM161BQ96MY7 647 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 SSU72Q9NP77 194 aaKnown RBP2.66□□□□□ -1.98
UBXN4-207ENST00000471246 PARP2Q9UGN5 583 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 CYP8B1Q9UNU6 501 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 SNX11Q9Y5W9 270 aa2.66□□□□□ -1.98
UBXN4-207ENST00000471246 FANCGO15287 622 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 CTSHP09668 335 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 ITIH2P19823 946 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 CDK8P49336 464 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 LIG3P49916 1009 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 RPS26P62854 115 aaKnown RBP2.65□□□□□ -1.99
UBXN4-207ENST00000471246 DAB2P98082 770 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 RING1Q06587 406 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 INPP5AQ14642 412 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 MAP3K11Q16584 847 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 CCDC27Q2M243 656 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 ARHGAP27Q6ZUM4 889 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 ARMCX6Q7L4S7 300 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 TMC4Q7Z404 712 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 ASB11Q8WXH4 323 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 TEPSINQ96N21 525 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 BDH2Q9BUT1 245 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 MCOLN1Q9GZU1 580 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 GZF1Q9H116 711 aaPredicted RBP2.65□□□□□ -1.99
UBXN4-207ENST00000471246 CNOT6Q9ULM6 557 aaKnown RBP2.65□□□□□ -1.99
UBXN4-207ENST00000471246 KCTD3Q9Y597 815 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 PCDHB5Q9Y5E4 795 aa2.65□□□□□ -1.99
UBXN4-207ENST00000471246 LMNB1P20700 586 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 RGS19P49795 217 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 ST13P50502 369 aaKnown RBP2.64□□□□□ -1.99
UBXN4-207ENST00000471246 XPCQ01831 940 aaPredicted RBP2.64□□□□□ -1.99
UBXN4-207ENST00000471246 TAGLNQ01995 201 aaKnown RBP2.64□□□□□ -1.99
UBXN4-207ENST00000471246 ZNF385BQ569K4 471 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 AGMOQ6ZNB7 445 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 CDC37L1Q7L3B6 337 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 HDXQ7Z353 690 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 KCT2Q8NC54 265 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 NAF1Q96HR8 494 aaKnown RBP2.64□□□□□ -1.99
UBXN4-207ENST00000471246 FBRSQ9HAH7 460 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 PRDM10Q9NQV6 1147 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 VTI1BQ9UEU0 232 aa2.64□□□□□ -1.99
UBXN4-207ENST00000471246 MYOCOSA0A1B0GUC4 107 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 F6X3S4 739 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 SORBS3O60504 671 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 LRIG2O94898 1065 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 ERCC3P19447 782 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 TFE3P19532 575 aaPredicted RBP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 GRK4P32298 578 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 KRTAP10-9P60411 292 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 ETF1P62495 437 aaKnown RBP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 SLBPQ14493 270 aaKnown RBP eCLIP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 SSPNQ14714 243 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 TAF1CQ15572 869 aaPredicted RBP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 NKG7Q16617 165 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 SYT8Q8NBV8 401 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 PHC3Q8NDX5 983 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 ZNF507Q8TCN5 953 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 HEXIM2Q96MH2 286 aaKnown RBP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 MIPEPQ99797 713 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 NOC4LQ9BVI4 516 aaKnown RBP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 WNT10AQ9GZT5 417 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 MIR1-1HGQ9H1L0 117 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 CARS2Q9HA77 564 aaKnown RBP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 MRS2Q9HD23 443 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 GCM1Q9NP62 436 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 PRDM5Q9NQX1 630 aaPredicted RBP2.63□□□□□ -1.99
UBXN4-207ENST00000471246 GTF2IRD1Q9UHL9 959 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 TLR6Q9Y2C9 796 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 SNCAIPQ9Y6H5 919 aa2.63□□□□□ -1.99
UBXN4-207ENST00000471246 GNAT3A8MTJ3 354 aa2.62□□□□□ -1.99
UBXN4-207ENST00000471246 IGF2BP3O00425 579 aaKnown RBP eCLIP2.62□□□□□ -1.99
UBXN4-207ENST00000471246 SLITRK5O94991 958 aa2.62□□□□□ -1.99
UBXN4-207ENST00000471246 EOMESO95936 686 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms