RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 USP17L13C9JLJ4 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 USP17L11C9JVI0 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 USP17L18D6R9N7 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 USP17L22D6RA61 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 USP17L17D6RBQ6 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 USP17L19D6RCP7 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 USP17L20D6RJB6 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 PLCG2P16885 1265 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 CNGA1P29973 690 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 CYP2C19P33261 490 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 ATP2B2Q01814 1243 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 USP17L24Q0WX57 530 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 MTX1Q13505 466 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 NAA16Q6N069 864 aaPredicted RBP17.78■□□□□ 0.44
CXCR4-203ENST00000466288 ADGRA1Q86SQ6 560 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 TRIM34Q9BYJ4 488 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 ATP11BQ9Y2G3 1177 aa17.78■□□□□ 0.44
CXCR4-203ENST00000466288 SMAD3P84022 425 aaKnown RBP17.77■□□□□ 0.44
CXCR4-203ENST00000466288 GJC2Q5T442 439 aaPredicted RBP17.77■□□□□ 0.44
CXCR4-203ENST00000466288 SLC39A5Q6ZMH5 540 aa17.77■□□□□ 0.44
CXCR4-203ENST00000466288 CATSPERGQ6ZRH7 1159 aa17.77■□□□□ 0.44
CXCR4-203ENST00000466288 FRMPD3Q5JV73 1810 aa17.77■□□□□ 0.43
CXCR4-203ENST00000466288 GH2P01242 217 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 UQCRFS1P1P0C7P4 283 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 CYBAP13498 195 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 WDR78Q5VTH9 848 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 LBX2Q6XYB7 198 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 BADQ92934 168 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 API5Q9BZZ5 524 aaKnown RBP17.76■□□□□ 0.43
CXCR4-203ENST00000466288 BTBD7Q9P203 1132 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 LTBP2Q14767 1821 aa17.76■□□□□ 0.43
CXCR4-203ENST00000466288 SNX17Q15036 470 aa17.75■□□□□ 0.43
CXCR4-203ENST00000466288 ZYXQ15942 572 aaKnown RBP17.75■□□□□ 0.43
CXCR4-203ENST00000466288 SAP30BPQ9UHR5 308 aaKnown RBP17.75■□□□□ 0.43
CXCR4-203ENST00000466288 TTC28Q96AY4 2481 aa17.75■□□□□ 0.43
CXCR4-203ENST00000466288 HLA-DOAP06340 250 aa17.75■□□□□ 0.43
CXCR4-203ENST00000466288 ARRDC4Q8NCT1 418 aa17.75■□□□□ 0.43
CXCR4-203ENST00000466288 PRDM5Q9NQX1 630 aaPredicted RBP17.75■□□□□ 0.43
CXCR4-203ENST00000466288 SNRKQ9NRH2 765 aa17.75■□□□□ 0.43
CXCR4-203ENST00000466288 IVNS1ABPQ9Y6Y0 642 aa17.75■□□□□ 0.43
CXCR4-203ENST00000466288 TRIM43BA6NCK2 446 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 FOSL2P15408 326 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 VCAM1P19320 739 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 USP14P54578 494 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 TRIM60Q495X7 471 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 TATDN1Q6P1N9 297 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 SH3RF1Q7Z6J0 888 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 SYMPKQ92797 1274 aaKnown RBP17.74■□□□□ 0.43
CXCR4-203ENST00000466288 TRIM43Q96BQ3 446 aaPredicted RBP17.74■□□□□ 0.43
CXCR4-203ENST00000466288 CDCA7LQ96GN5 454 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 FEZ1Q99689 392 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 KIAA1683Q9H0B3 1180 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 PDLIM7Q9NR12 457 aa17.74■□□□□ 0.43
CXCR4-203ENST00000466288 SPDYE16A6NNV3 312 aaPredicted RBP17.73■□□□□ 0.43
CXCR4-203ENST00000466288 CYP2E1P05181 493 aaPredicted RBP17.73■□□□□ 0.43
CXCR4-203ENST00000466288 GNAI3P08754 354 aa17.73■□□□□ 0.43
CXCR4-203ENST00000466288 ANO1Q5XXA6 986 aa17.73■□□□□ 0.43
CXCR4-203ENST00000466288 OLFML2BQ68BL8 750 aa17.73■□□□□ 0.43
CXCR4-203ENST00000466288 ATF7IPQ6VMQ6 1270 aa17.73■□□□□ 0.43
CXCR4-203ENST00000466288 ACER1Q8TDN7 264 aa17.73■□□□□ 0.43
CXCR4-203ENST00000466288 KBTBD13C9JR72 458 aa17.72■□□□□ 0.43
CXCR4-203ENST00000466288 DYNLL1P63167 89 aaKnown RBP17.72■□□□□ 0.43
CXCR4-203ENST00000466288 TRMT2AQ8IZ69 625 aaKnown RBP17.72■□□□□ 0.43
CXCR4-203ENST00000466288 SEPT4O43236 478 aa17.71■□□□□ 0.43
CXCR4-203ENST00000466288 C1orf53Q5VUE5 145 aa17.71■□□□□ 0.43
CXCR4-203ENST00000466288 DPP9Q86TI2 863 aa17.71■□□□□ 0.43
CXCR4-203ENST00000466288 TMEM265A0A087WTH1 108 aa17.7■□□□□ 0.42
CXCR4-203ENST00000466288 ITGB8P26012 769 aa17.7■□□□□ 0.42
CXCR4-203ENST00000466288 ADORA2AP29274 412 aa17.7■□□□□ 0.42
CXCR4-203ENST00000466288 ADCYAP1R1P41586 468 aa17.7■□□□□ 0.42
CXCR4-203ENST00000466288 G3BP1Q13283 466 aaKnown RBP eCLIP17.7■□□□□ 0.42
CXCR4-203ENST00000466288 RAB3GAP1Q15042 981 aa17.7■□□□□ 0.42
CXCR4-203ENST00000466288 MOV10L1Q9BXT6 1211 aaKnown RBP17.7■□□□□ 0.42
CXCR4-203ENST00000466288 RPAP3Q9H6T3 665 aaPredicted RBP17.7■□□□□ 0.42
CXCR4-203ENST00000466288 RLFQ13129 1914 aa17.7■□□□□ 0.42
CXCR4-203ENST00000466288 PNMA6EA0A0J9YXQ4 647 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 STRNO43815 780 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 IGSF3O75054 1194 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 COBLO75128 1261 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 EPHB4P54760 987 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 TTC39AQ5SRH9 613 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 USP38Q8NB14 1042 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 DBNDD2Q9BQY9 259 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 EHD4Q9H223 541 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 PIH1D3Q9NQM4 214 aaKnown RBP17.69■□□□□ 0.42
CXCR4-203ENST00000466288 SERPINB13Q9UIV8 391 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 CT47B1P0C2W7 299 aaPredicted RBP17.69■□□□□ 0.42
CXCR4-203ENST00000466288 TLE2Q04725 743 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 LRRC41Q15345 812 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 CERKLQ49MI3 558 aaPredicted RBP17.69■□□□□ 0.42
CXCR4-203ENST00000466288 FERMT2Q96AC1 680 aa17.69■□□□□ 0.42
CXCR4-203ENST00000466288 MYCNP04198 464 aaPredicted RBP17.68■□□□□ 0.42
CXCR4-203ENST00000466288 COL9A1P20849 921 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 GUCY1A2P33402 732 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 ZAP70P43403 619 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 GRIN2CQ14957 1233 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 ABCB5Q2M3G0 1257 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 TJAP1Q5JTD0 557 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 CCDC158Q5M9N0 1113 aa17.68■□□□□ 0.42
CXCR4-203ENST00000466288 PRAMEF19Q5SWL8 479 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms