RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 JAG1P78504 1218 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 U2AF1L4Q8WU68 220 aaKnown RBP21.29■■□□□ 1
COL7A1-205ENST00000465238 EVI5LQ96CN4 794 aa21.29■■□□□ 1
COL7A1-205ENST00000465238 TRIM6-TRIM34B2RNG4 842 aa21.28■■□□□ 1
COL7A1-205ENST00000465238 RNF113AO15541 343 aaKnown RBP21.28■■□□□ 1
COL7A1-205ENST00000465238 UBE2Q1Q7Z7E8 422 aa21.28■■□□□ 1
COL7A1-205ENST00000465238 MORF4L1Q9UBU8 362 aa21.28■■□□□ 1
COL7A1-205ENST00000465238 SGPL1O95470 568 aa21.27■■□□□ 1
COL7A1-205ENST00000465238 HTATIP2Q9BUP3 242 aa21.27■■□□□ 1
COL7A1-205ENST00000465238 EHD4Q9H223 541 aa21.27■■□□□ 1
COL7A1-205ENST00000465238 TAOK2Q9UL54 1235 aa21.27■■□□□ 1
COL7A1-205ENST00000465238 SHROOM1Q2M3G4 852 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-205ENST00000465238 SLFNL1Q499Z3 407 aa21.26■□□□□ 0.99
COL7A1-205ENST00000465238 TATDN1Q6P1N9 297 aa21.26■□□□□ 0.99
COL7A1-205ENST00000465238 TTC6Q86TZ1 520 aa21.26■□□□□ 0.99
COL7A1-205ENST00000465238 RILPL2Q969X0 211 aa21.26■□□□□ 0.99
COL7A1-205ENST00000465238 RIOK1Q9BRS2 568 aaKnown RBP21.26■□□□□ 0.99
COL7A1-205ENST00000465238 SERPINB13Q9UIV8 391 aa21.26■□□□□ 0.99
COL7A1-205ENST00000465238 H0YGN5 161 aa21.25■□□□□ 0.99
COL7A1-205ENST00000465238 CHGBP05060 677 aa21.25■□□□□ 0.99
COL7A1-205ENST00000465238 DPF3Q92784 378 aa21.25■□□□□ 0.99
COL7A1-205ENST00000465238 P2RX7Q99572 595 aaKnown RBP21.25■□□□□ 0.99
COL7A1-205ENST00000465238 CRNKL1Q9BZJ0 848 aaKnown RBP21.25■□□□□ 0.99
COL7A1-205ENST00000465238 FARP2O94887 1054 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-205ENST00000465238 GH2P01242 217 aa21.24■□□□□ 0.99
COL7A1-205ENST00000465238 HERVK_113P62684 666 aa21.24■□□□□ 0.99
COL7A1-205ENST00000465238 APPBP2Q92624 585 aa21.24■□□□□ 0.99
COL7A1-205ENST00000465238 ARMT1Q9H993 441 aa21.24■□□□□ 0.99
COL7A1-205ENST00000465238 PAK6Q9NQU5 681 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-205ENST00000465238 GJD2Q9UKL4 321 aa21.24■□□□□ 0.99
COL7A1-205ENST00000465238 MBD4O95243 580 aa21.23■□□□□ 0.99
COL7A1-205ENST00000465238 HMGCRP04035 888 aa21.23■□□□□ 0.99
COL7A1-205ENST00000465238 USP17L2Q6R6M4 530 aa21.23■□□□□ 0.99
COL7A1-205ENST00000465238 LCORLQ8N3X6 602 aa21.23■□□□□ 0.99
COL7A1-205ENST00000465238 GPRC5AQ8NFJ5 357 aa21.23■□□□□ 0.99
COL7A1-205ENST00000465238 GTF3C2Q8WUA4 911 aaPredicted RBP21.23■□□□□ 0.99
COL7A1-205ENST00000465238 DEFB118Q96PH6 123 aa21.23■□□□□ 0.99
COL7A1-205ENST00000465238 COLQQ9Y215 455 aaPredicted RBP21.23■□□□□ 0.99
COL7A1-205ENST00000465238 TRIOBPQ9H2D6 2365 aa21.22■□□□□ 0.99
COL7A1-205ENST00000465238 TFRCP02786 760 aaKnown RBP21.22■□□□□ 0.99
COL7A1-205ENST00000465238 TTC22Q5TAA0 569 aa21.22■□□□□ 0.99
COL7A1-205ENST00000465238 TICAM2Q86XR7 235 aa21.22■□□□□ 0.99
COL7A1-205ENST00000465238 PUS7LQ9H0K6 701 aaKnown RBP21.22■□□□□ 0.99
COL7A1-205ENST00000465238 EMILIN3Q9NT22 766 aa21.22■□□□□ 0.99
COL7A1-205ENST00000465238 DDX60LQ5H9U9 1706 aaKnown RBP21.21■□□□□ 0.99
COL7A1-205ENST00000465238 PLXNB2O15031 1838 aa21.21■□□□□ 0.99
COL7A1-205ENST00000465238 CERKLQ49MI3 558 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-205ENST00000465238 OSBP2Q969R2 916 aa21.21■□□□□ 0.99
COL7A1-205ENST00000465238 C12orf42Q96LP6 360 aa21.21■□□□□ 0.99
COL7A1-205ENST00000465238 FEZ1Q99689 392 aa21.21■□□□□ 0.99
COL7A1-205ENST00000465238 CRISPLD2Q9H0B8 497 aa21.21■□□□□ 0.99
COL7A1-205ENST00000465238 TXNRD2Q9NNW7 524 aa21.21■□□□□ 0.99
COL7A1-205ENST00000465238 NAV1Q8NEY1 1877 aa21.2■□□□□ 0.98
COL7A1-205ENST00000465238 USP14P54578 494 aa21.2■□□□□ 0.98
COL7A1-205ENST00000465238 ABCB5Q2M3G0 1257 aa21.2■□□□□ 0.98
COL7A1-205ENST00000465238 SOCS4Q8WXH5 440 aa21.2■□□□□ 0.98
COL7A1-205ENST00000465238 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.2■□□□□ 0.98
COL7A1-205ENST00000465238 CABP5Q9NP86 173 aa21.2■□□□□ 0.98
COL7A1-205ENST00000465238 RBPJLQ9UBG7 517 aa21.2■□□□□ 0.98
COL7A1-205ENST00000465238 NR2E3Q9Y5X4 410 aa21.2■□□□□ 0.98
COL7A1-205ENST00000465238 POLR3DP05423 398 aaPredicted RBP21.19■□□□□ 0.98
COL7A1-205ENST00000465238 MAPK4P31152 587 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 PLCD1P51178 756 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 ERVK-9P63128 1117 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 ERVK-24P63145 666 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 RAB3GAP1Q15042 981 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 ZMYM1Q5SVZ6 1142 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 NUDT12Q9BQG2 462 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 KIAA1683Q9H0B3 1180 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 SLC4A4Q9Y6R1 1079 aa21.19■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L15C9J2P7 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L13C9JLJ4 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L11C9JVI0 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L18D6R9N7 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L22D6RA61 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L17D6RBQ6 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L19D6RCP7 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L20D6RJB6 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 SHMT1P34896 483 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 FXR1P51114 621 aaKnown RBP eCLIP21.18■□□□□ 0.98
COL7A1-205ENST00000465238 USP17L24Q0WX57 530 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 CCAR1Q8IX12 1150 aaKnown RBP21.18■□□□□ 0.98
COL7A1-205ENST00000465238 SDR42E1Q8WUS8 393 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 DDRGK1Q96HY6 314 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 STRBPQ96SI9 672 aaKnown RBP21.18■□□□□ 0.98
COL7A1-205ENST00000465238 HMX1Q9NP08 348 aaPredicted RBP21.18■□□□□ 0.98
COL7A1-205ENST00000465238 RPTORQ8N122 1335 aa21.18■□□□□ 0.98
COL7A1-205ENST00000465238 M0R2C6 588 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 GPAA1O43292 621 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 PRKAB2O43741 272 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 PEX10O60683 326 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 XRCC5P13010 732 aaKnown RBP21.17■□□□□ 0.98
COL7A1-205ENST00000465238 SDSP20132 328 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 ZYXQ15942 572 aaKnown RBP21.17■□□□□ 0.98
COL7A1-205ENST00000465238 PAGR1Q9BTK6 254 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 HELLSQ9NRZ9 838 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 ATP8A2Q9NTI2 1148 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 MCM9Q9NXL9 1143 aa21.17■□□□□ 0.98
COL7A1-205ENST00000465238 RANBP2P49792 3224 aaKnown RBP21.17■□□□□ 0.98
COL7A1-205ENST00000465238 HIP1O00291 1037 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms