RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 GLIS3Q8NEA6 775 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 TRPV1Q8NER1 839 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 MRPL38Q96DV4 380 aaKnown RBP3.47□□□□□ -1.85
USP40-211ENST00000464956 FAM89AQ96GI7 184 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 CARD14Q9BXL6 1004 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 ASCC2Q9H1I8 757 aaPredicted RBP3.47□□□□□ -1.85
USP40-211ENST00000464956 HIPK3Q9H422 1215 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 SUGCTQ9HAC7 445 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 XPNPEP3Q9NQH7 507 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 SEC31BQ9NQW1 1179 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 FLRT1Q9NZU1 646 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 ZNF112Q9UJU3 913 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 MTUS1Q9ULD2 1270 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 LEMD3Q9Y2U8 911 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 R4GN57 208 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 SCN9AQ15858 1988 aa3.47□□□□□ -1.85
USP40-211ENST00000464956 SPTBN4Q9H254 2564 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 SLC15A5A6NIM6 579 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 IRS4O14654 1257 aaPredicted RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 SLC30A4O14863 429 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 ARHGEF15O94989 841 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 HOXC6P09630 235 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 KCNJ4P48050 445 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CACNB3P54284 484 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CCNA1P78396 465 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CBX2Q14781 532 aaPredicted RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 COL19A1Q14993 1142 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 TCEAL5Q5H9L2 206 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 VARS2Q5ST30 1063 aaKnown RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 TREML2Q5T2D2 321 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 WDR78Q5VTH9 848 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 COPS6Q7L5N1 327 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 RPAINQ86UA6 219 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 TXNRD3Q86VQ6 643 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 HERC6Q8IVU3 1022 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CCDC105Q8IYK2 499 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 UBALD2Q8IYN6 164 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 NETO1Q8TDF5 533 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 GTF3C2Q8WUA4 911 aaPredicted RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 L3MBTL2Q969R5 705 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 VTI1AQ96AJ9 217 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 GLT1D1Q96MS3 346 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 TGS1Q96RS0 853 aaKnown RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 CRBNQ96SW2 442 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CDC5LQ99459 802 aaKnown RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 TSEN34Q9BSV6 310 aaKnown RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 ZBED2Q9BTP6 218 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 NSUN3Q9H649 340 aaKnown RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 CD209Q9NNX6 404 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CACNA2D2Q9NY47 1150 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CD207Q9UJ71 328 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 USP18Q9UMW8 372 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 TTF2Q9UNY4 1162 aaKnown RBP3.46□□□□□ -1.86
USP40-211ENST00000464956 IVNS1ABPQ9Y6Y0 642 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 CHD6Q8TD26 2715 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 FAM186AA6NE01 2351 aa3.46□□□□□ -1.86
USP40-211ENST00000464956 FLNBO75369 2602 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 MOXD2PA6NHM9 499 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 ENO4A6NNW6 628 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 KINO60870 393 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 PGK1P00558 417 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 CRKP46108 304 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 ACLYP53396 1101 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 CCL23P55773 120 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 ERVK-21P61565 698 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 MTMR3Q13615 1198 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 TTLL4Q14679 1199 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 NCBP3Q53F19 620 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 CDCA8Q53HL2 280 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 RTL5Q5HYW3 569 aaPredicted RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 N4BP2L1Q5TBK1 243 aaPredicted RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 FKBP1CQ5VVH2 108 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 PDZD3Q86UT5 571 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 DTWD2Q8NBA8 298 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.45□□□□□ -1.86
USP40-211ENST00000464956 FBXO22Q8NEZ5 403 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 ZCCHC14Q8WYQ9 949 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 RTF1Q92541 710 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 ZNF428Q96B54 188 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 RUNDC1Q96C34 613 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 TESK2Q96S53 571 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 LSM14BQ9BX40 385 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 SLC4A5Q9BY07 1137 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 PORCNQ9H237 461 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 MINPP1Q9UNW1 487 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 RFX7Q2KHR2 1363 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 TECTAO75443 2155 aa3.45□□□□□ -1.86
USP40-211ENST00000464956 SETXQ7Z333 2677 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 ASH1LQ9NR48 2969 aaKnown RBP3.45□□□□□ -1.86
USP40-211ENST00000464956 ELP1O95163 1332 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 A0A0U1RQG5 324 aaPredicted RBP3.44□□□□□ -1.86
USP40-211ENST00000464956 LCHNA4D1U4 455 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 ARVCFO00192 962 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 PLA2G2AP14555 144 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 KCNJ6P48051 423 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 ERVK-9P63128 1117 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 ERVK-24P63145 666 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 NEUROD2Q15784 382 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 PROSER3Q2NL68 480 aa3.44□□□□□ -1.86
USP40-211ENST00000464956 MFSD14BQ5SR56 506 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms