RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 C12orf60Q5U649 245 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 CATSPERGQ6ZRH7 1159 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 AMOTL1Q8IY63 956 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 CCDC17Q96LX7 622 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 FEZ1Q99689 392 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 RNF208Q9H0X6 261 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 RBPJLQ9UBG7 517 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 RABGAP1Q9Y3P9 1069 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 MYH8P13535 1937 aa8.77□□□□□ -1.01
PTPRF-210ENST00000463041 USP17L12C9JPN9 530 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 USP17L21D6R901 530 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 ERC2O15083 957 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 PRKAB2O43741 272 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 SGPL1O95470 568 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 ZFYP08048 801 aaPredicted RBP8.76□□□□□ -1.01
PTPRF-210ENST00000463041 MAPK4P31152 587 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 GUCY1A2P33402 732 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 RRP1P56182 461 aaKnown RBP8.76□□□□□ -1.01
PTPRF-210ENST00000463041 SEPT2Q15019 361 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 Q3C1V9 767 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 SLFNL1Q499Z3 407 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 GIMAP6Q6P9H5 292 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 TMEM179Q6ZVK1 233 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 CCAR1Q8IX12 1150 aaKnown RBP8.76□□□□□ -1.01
PTPRF-210ENST00000463041 KBTBD3Q8NAB2 608 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 ACER1Q8TDN7 264 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 STRBPQ96SI9 672 aaKnown RBP8.76□□□□□ -1.01
PTPRF-210ENST00000463041 HOXC10Q9NYD6 342 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 SLC4A4Q9Y6R1 1079 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 NAV1Q8NEY1 1877 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 TTC41PQ6P2S7 1318 aa8.76□□□□□ -1.01
PTPRF-210ENST00000463041 MPHOSPH10O00566 681 aaKnown RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 RNF113AO15541 343 aaKnown RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 GLRX3O76003 335 aaKnown RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 INHAP05111 366 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 CYP2D6P10635 497 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 XRCC5P13010 732 aaKnown RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 ELNP15502 786 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 CDK8P49336 464 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 ERVK-9P63128 1117 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 ERVK-24P63145 666 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 CCNA1P78396 465 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 AAMPQ13685 434 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 COG2Q14746 738 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 ZYXQ15942 572 aaKnown RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 SBK1Q52WX2 424 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 LBX2Q6XYB7 198 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 TRMT44Q8IYL2 757 aaKnown RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 GCC1Q96CN9 775 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 NUDT12Q9BQG2 462 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 PUS7LQ9H0K6 701 aaKnown RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 UNC93B1Q9H1C4 597 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 TXNRD2Q9NNW7 524 aa8.75□□□□□ -1.01
PTPRF-210ENST00000463041 ZBTB47Q9UFB7 747 aaPredicted RBP8.75□□□□□ -1.01
PTPRF-210ENST00000463041 ZNFX1Q9P2E3 1918 aaKnown RBP8.74□□□□□ -1.01
PTPRF-210ENST00000463041 A0A1W2PRG0 241 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 TFRCP02786 760 aaKnown RBP8.74□□□□□ -1.01
PTPRF-210ENST00000463041 GNAT2P19087 354 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 VCAM1P19320 739 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 EVX2Q03828 476 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 CTR9Q6PD62 1173 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 POTEEQ6S8J3 1075 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 C16orf86Q6ZW13 317 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 PLEKHH3Q7Z736 793 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 SIAH1Q8IUQ4 282 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 U2AF1L4Q8WU68 220 aaKnown RBP8.74□□□□□ -1.01
PTPRF-210ENST00000463041 SOCS4Q8WXH5 440 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 APPBP2Q92624 585 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 OSBP2Q969R2 916 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 DYNLL2Q96FJ2 89 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 RPAP3Q9H6T3 665 aaPredicted RBP8.74□□□□□ -1.01
PTPRF-210ENST00000463041 SH2D4AQ9H788 454 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 KANSL2Q9H9L4 492 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 ARHGEF10LQ9HCE6 1279 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 TMX2Q9Y320 296 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 RPTORQ8N122 1335 aa8.74□□□□□ -1.01
PTPRF-210ENST00000463041 PLXNB2O15031 1838 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 GSG1L2A8MUP6 293 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 PATL2C9JE40 543 aaKnown RBP8.73□□□□□ -1.01
PTPRF-210ENST00000463041 HMGCRP04035 888 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 CHGBP05060 677 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 CYP2B6P20813 491 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 HDAC1Q13547 482 aaPredicted RBP8.73□□□□□ -1.01
PTPRF-210ENST00000463041 ANKRD45Q5TZF3 282 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 GPR142Q7Z601 462 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 UBE2Q1Q7Z7E8 422 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 SLC44A5Q8NCS7 719 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 LPAR1Q92633 364 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 USP6NLQ92738 828 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 SHISA4Q96DD7 197 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 CRBNQ96SW2 442 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 PAGR1Q9BTK6 254 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 HTATIP2Q9BUP3 242 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 CRISPLD2Q9H0B8 497 aa8.73□□□□□ -1.01
PTPRF-210ENST00000463041 HMX1Q9NP08 348 aaPredicted RBP8.73□□□□□ -1.01
PTPRF-210ENST00000463041 PAK6Q9NQU5 681 aaPredicted RBP8.73□□□□□ -1.01
PTPRF-210ENST00000463041 ARPP21Q9UBL0 812 aaPredicted RBP8.73□□□□□ -1.01
PTPRF-210ENST00000463041 DDX60LQ5H9U9 1706 aaKnown RBP8.73□□□□□ -1.01
PTPRF-210ENST00000463041 CYP2D7A0A087X1C5 515 aa8.72□□□□□ -1.01
PTPRF-210ENST00000463041 SLC15A5A6NIM6 579 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms