RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 FAM217BQ9NTX9 383 aaPredicted RBP14.17□□□□□ -0.14
HDAC4-208ENST00000463007 SLC5A1P13866 664 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 CDC25AP30304 524 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 GPS2Q13227 327 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 NTRK3Q16288 839 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 LONRF2Q1L5Z9 754 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 TC2NQ8N9U0 490 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 FAM53CQ9NYF3 392 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 MAN1B1Q9UKM7 699 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 PCDHB6Q9Y5E3 794 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 MAST2Q6P0Q8 1798 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 FAM205CA6NFA0 338 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 H3BQF6 201 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 IKBKBO14920 756 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 SPECC1LQ69YQ0 1117 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 LY9Q9HBG7 655 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 ADAM21Q9UKJ8 722 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 GSG1L2A8MUP6 293 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 RANBP6O60518 1105 aaKnown RBP14.16□□□□□ -0.14
HDAC4-208ENST00000463007 POSTNQ15063 836 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 PPFIBP1Q86W92 1011 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 DIS3L2Q8IYB7 885 aaKnown RBP14.16□□□□□ -0.14
HDAC4-208ENST00000463007 ACRBPQ8NEB7 543 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 CABP5Q9NP86 173 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 TFR2Q9UP52 801 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 SLC12A7Q9Y666 1083 aa14.16□□□□□ -0.14
HDAC4-208ENST00000463007 MYH13Q9UKX3 1938 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 KCNQ2O43526 872 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 ADAMTS2O95450 1211 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 FAM193AP78312 1265 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 CCDC152Q4G0S7 254 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 CLEC4GQ6UXB4 293 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 C3orf67Q6ZVT6 689 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 BPIFA3Q9BQP9 254 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 SBF2Q86WG5 1849 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 SRCAPQ6ZRS2 3230 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 LAMB1P07942 1786 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 PATL2C9JE40 543 aaKnown RBP14.15□□□□□ -0.14
HDAC4-208ENST00000463007 CHMP4BP1P59074 171 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 KRI1Q8N9T8 703 aaKnown RBP14.15□□□□□ -0.14
HDAC4-208ENST00000463007 LINC00116Q8NCU8 138 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 OXER1Q8TDS5 423 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 AIDAQ96BJ3 306 aa14.15□□□□□ -0.14
HDAC4-208ENST00000463007 RBL2Q08999 1139 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 PTPAQ15257 358 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 FKBP15Q5T1M5 1219 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 JAKMIP3Q5VZ66 844 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 TMEM139Q8IV31 216 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 IGSF22Q8N9C0 903 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 GOLGA1Q92805 767 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 EPSTI1Q96J88 318 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 DUOX1Q9NRD9 1551 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 PRDM1O75626 825 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 ZMYND10O75800 440 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 SSRP1Q08945 709 aaKnown RBP14.14□□□□□ -0.15
HDAC4-208ENST00000463007 SAFBQ15424 915 aaKnown RBP eCLIP14.14□□□□□ -0.15
HDAC4-208ENST00000463007 SLC4A8Q2Y0W8 1093 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 IFNL3Q8IZI9 196 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 MIGA1Q8NAN2 632 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.14□□□□□ -0.15
HDAC4-208ENST00000463007 TUBE1Q9UJT0 475 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 TNRC6CQ9HCJ0 1690 aaKnown RBP14.14□□□□□ -0.15
HDAC4-208ENST00000463007 MAP3K9P80192 1104 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 AKAP17AQ02040 695 aaKnown RBP14.14□□□□□ -0.15
HDAC4-208ENST00000463007 PPARDQ03181 441 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 CHRNDQ07001 517 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 SF3B3Q15393 1217 aaKnown RBP14.14□□□□□ -0.15
HDAC4-208ENST00000463007 FOXR1Q6PIV2 292 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 TMEM87BQ96K49 555 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 MPHOSPH8Q99549 860 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 VPS16Q9H269 839 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 BLZF1Q9H2G9 400 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 NIP7Q9Y221 180 aaKnown RBP eCLIP14.14□□□□□ -0.15
HDAC4-208ENST00000463007 MRFAP1Q9Y605 127 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 CNTNAP4Q9C0A0 1308 aa14.14□□□□□ -0.15
HDAC4-208ENST00000463007 PRKAB2O43741 272 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 LIFRP42702 1097 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 BCAMP50895 628 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 RESP18Q5W5W9 173 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 RAD9BQ6WBX8 426 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 GPR161Q8N6U8 529 aaKnown RBP14.13□□□□□ -0.15
HDAC4-208ENST00000463007 MAGEB6Q8N7X4 407 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 RAI14Q9P0K7 980 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 RSPH14Q9UHP6 348 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 MINDY4BA8MYZ0 360 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 SMIM22K7EJ46 135 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 ENC1O14682 589 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 MBD4O95243 580 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 CCDC175P0C221 793 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 CASP14P31944 242 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 PNKPQ96T60 521 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 SRRTQ9BXP5 876 aaKnown RBP14.13□□□□□ -0.15
HDAC4-208ENST00000463007 FUT8Q9BYC5 575 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 ARMT1Q9H993 441 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 ZSWIM5Q9P217 1185 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 MTMR7Q9Y216 660 aa14.13□□□□□ -0.15
HDAC4-208ENST00000463007 PAXIP1Q6ZW49 1069 aaPredicted RBP14.12□□□□□ -0.15
HDAC4-208ENST00000463007 ADGRA1Q86SQ6 560 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 LCORLQ8N3X6 602 aa14.12□□□□□ -0.15
HDAC4-208ENST00000463007 STAG1Q8WVM7 1258 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms