RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 MAGEB6P1A0A0J9YX57 407 aa19.55■□□□□ 0.72
COL7A1-204ENST00000462475 CNMDO75829 334 aa19.55■□□□□ 0.72
COL7A1-204ENST00000462475 XRCC5P13010 732 aaKnown RBP19.55■□□□□ 0.72
COL7A1-204ENST00000462475 ZKSCAN1P17029 563 aaPredicted RBP19.55■□□□□ 0.72
COL7A1-204ENST00000462475 VCAM1P19320 739 aa19.55■□□□□ 0.72
COL7A1-204ENST00000462475 MORN1Q5T089 497 aa19.55■□□□□ 0.72
COL7A1-204ENST00000462475 SLC9C2Q5TAH2 1124 aa19.55■□□□□ 0.72
COL7A1-204ENST00000462475 KIAA1683Q9H0B3 1180 aa19.55■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L15C9J2P7 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L13C9JLJ4 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L11C9JVI0 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L18D6R9N7 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L22D6RA61 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L17D6RBQ6 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L19D6RCP7 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L20D6RJB6 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 GOLIM4O00461 696 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 GUCY1A2P33402 732 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 USP17L24Q0WX57 530 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 TTF1Q15361 905 aaPredicted RBP19.54■□□□□ 0.72
COL7A1-204ENST00000462475 CCL14Q16627 93 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 CCAR1Q8IX12 1150 aaKnown RBP19.54■□□□□ 0.72
COL7A1-204ENST00000462475 SIRT2Q8IXJ6 389 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 CLASRPQ8N2M8 674 aaKnown RBP19.54■□□□□ 0.72
COL7A1-204ENST00000462475 KIF1BPQ96EK5 621 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 DNAJC2Q99543 621 aaKnown RBP19.54■□□□□ 0.72
COL7A1-204ENST00000462475 OGDHLQ9ULD0 1010 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 ALPK3Q96L96 1907 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 NAV1Q8NEY1 1877 aa19.54■□□□□ 0.72
COL7A1-204ENST00000462475 ZNF532Q9HCE3 1301 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 POLR3DP05423 398 aaPredicted RBP19.53■□□□□ 0.72
COL7A1-204ENST00000462475 RGS2P41220 211 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 USP14P54578 494 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 GABPAQ06546 454 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 CATSPERGQ6ZRH7 1159 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 PLEKHH3Q7Z736 793 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.53■□□□□ 0.72
COL7A1-204ENST00000462475 EDC3Q96F86 508 aaKnown RBP19.53■□□□□ 0.72
COL7A1-204ENST00000462475 APBA2Q99767 749 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 CRNKL1Q9BZJ0 848 aaKnown RBP19.53■□□□□ 0.72
COL7A1-204ENST00000462475 NBPF3Q9H094 633 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 BCL11AQ9H165 835 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 CABP5Q9NP86 173 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 COG6Q9Y2V7 657 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 RABGAP1Q9Y3P9 1069 aa19.53■□□□□ 0.72
COL7A1-204ENST00000462475 TCRBV5S4A2TA0A5A2 114 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 MS4A1P11836 297 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 CACNB2Q08289 660 aaPredicted RBP19.52■□□□□ 0.72
COL7A1-204ENST00000462475 SEPT2Q15019 361 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 C7orf61Q8IZ16 206 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 LCORLQ8N3X6 602 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 SDR42E1Q8WUS8 393 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 C11orf49Q9H6J7 331 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 ZBTB40Q9NUA8 1239 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 MCM9Q9NXL9 1143 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 STAP2Q9UGK3 403 aa19.52■□□□□ 0.72
COL7A1-204ENST00000462475 IFIT2P09913 472 aaKnown RBP19.51■□□□□ 0.71
COL7A1-204ENST00000462475 CYP2D6P10635 497 aa19.51■□□□□ 0.71
COL7A1-204ENST00000462475 CCND3P30281 292 aaPredicted RBP19.51■□□□□ 0.71
COL7A1-204ENST00000462475 RPAP2Q8IXW5 612 aaPredicted RBP19.51■□□□□ 0.71
COL7A1-204ENST00000462475 TRMT44Q8IYL2 757 aaKnown RBP19.51■□□□□ 0.71
COL7A1-204ENST00000462475 RPAP3Q9H6T3 665 aaPredicted RBP19.51■□□□□ 0.71
COL7A1-204ENST00000462475 CWC22Q9HCG8 908 aaKnown RBP19.51■□□□□ 0.71
COL7A1-204ENST00000462475 DDX19BQ9UMR2 479 aa19.51■□□□□ 0.71
COL7A1-204ENST00000462475 SPDYE16A6NNV3 312 aaPredicted RBP19.5■□□□□ 0.71
COL7A1-204ENST00000462475 HMMRO75330 724 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 MAP2K5Q13163 448 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 SLFNL1Q499Z3 407 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 WDR78Q5VTH9 848 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 LBX2Q6XYB7 198 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 SLC44A5Q8NCS7 719 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 DCP1AQ9NPI6 582 aaPredicted RBP19.5■□□□□ 0.71
COL7A1-204ENST00000462475 BTBD7Q9P203 1132 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 ZMYND8Q9ULU4 1186 aaPredicted RBP19.5■□□□□ 0.71
COL7A1-204ENST00000462475 PFASO15067 1338 aa19.5■□□□□ 0.71
COL7A1-204ENST00000462475 A0A1W2PRG0 241 aa19.49■□□□□ 0.71
COL7A1-204ENST00000462475 MPHOSPH10O00566 681 aaKnown RBP19.49■□□□□ 0.71
COL7A1-204ENST00000462475 CCNA1P78396 465 aa19.49■□□□□ 0.71
COL7A1-204ENST00000462475 ARMT1Q9H993 441 aa19.49■□□□□ 0.71
COL7A1-204ENST00000462475 A0A1W2PPC1 479 aa19.48■□□□□ 0.71
COL7A1-204ENST00000462475 SOX1O00570 391 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-204ENST00000462475 LHX8Q68G74 356 aa19.48■□□□□ 0.71
COL7A1-204ENST00000462475 BOLA2Q9H3K6 86 aa19.48■□□□□ 0.71
COL7A1-204ENST00000462475 FLRT1Q9NZU1 646 aa19.48■□□□□ 0.71
COL7A1-204ENST00000462475 PRKAB2O43741 272 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 RAB11FIP3O75154 756 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 GLRX3O76003 335 aaKnown RBP19.47■□□□□ 0.71
COL7A1-204ENST00000462475 PTPREP23469 700 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 ADD2P35612 726 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 CLEC10AQ8IUN9 316 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 DYNLL2Q96FJ2 89 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 GDF15Q99988 308 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 PAG1Q9NWQ8 432 aa19.47■□□□□ 0.71
COL7A1-204ENST00000462475 SLC15A5A6NIM6 579 aa19.46■□□□□ 0.71
COL7A1-204ENST00000462475 SMIM22K7EJ46 135 aa19.46■□□□□ 0.71
COL7A1-204ENST00000462475 MBD4O95243 580 aa19.46■□□□□ 0.71
COL7A1-204ENST00000462475 CHGBP05060 677 aa19.46■□□□□ 0.71
COL7A1-204ENST00000462475 COL6A1P12109 1028 aa19.46■□□□□ 0.71
COL7A1-204ENST00000462475 SYN1P17600 705 aa19.46■□□□□ 0.71
COL7A1-204ENST00000462475 GRB14Q14449 540 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms