RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 LRRC8AQ8IWT6 810 aa17.53■□□□□ 0.4
LMNB1-203ENST00000460265 TXLNBQ8N3L3 684 aa17.53■□□□□ 0.4
LMNB1-203ENST00000460265 GPKOWQ92917 476 aaPredicted RBP eCLIP17.53■□□□□ 0.48e-6■■■□□ 18.6
LMNB1-203ENST00000460265 FANCLQ9NW38 375 aa17.53■□□□□ 0.4
LMNB1-203ENST00000460265 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.53■□□□□ 0.4
LMNB1-203ENST00000460265 COL18A1P39060 1754 aa17.52■□□□□ 0.4
LMNB1-203ENST00000460265 EIF6P56537 245 aaKnown RBP17.52■□□□□ 0.4
LMNB1-203ENST00000460265 ALX1Q15699 326 aa17.52■□□□□ 0.4
LMNB1-203ENST00000460265 SGMS1Q86VZ5 419 aa17.52■□□□□ 0.4
LMNB1-203ENST00000460265 ABCC12Q96J65 1359 aa17.52■□□□□ 0.4
LMNB1-203ENST00000460265 TRIM66O15016 1216 aa17.52■□□□□ 0.4
LMNB1-203ENST00000460265 USP49Q70CQ1 688 aa17.52■□□□□ 0.4
LMNB1-203ENST00000460265 EVCP57679 992 aa17.52■□□□□ 0.39
LMNB1-203ENST00000460265 ERCC6LQ2NKX8 1250 aa17.52■□□□□ 0.39
LMNB1-203ENST00000460265 SPTY2D1Q68D10 685 aaPredicted RBP17.52■□□□□ 0.39
LMNB1-203ENST00000460265 DHX40Q8IX18 779 aaKnown RBP17.52■□□□□ 0.39
LMNB1-203ENST00000460265 RASGRP4Q8TDF6 673 aa17.52■□□□□ 0.39
LMNB1-203ENST00000460265 CCDC194A0A1B0GVG4 234 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 MYL5Q02045 173 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 SLC51AQ86UW1 340 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 GOLGA6L1Q8N7Z2 621 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 GPATCH11Q8N954 259 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 SLC44A5Q8NCS7 719 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 CSRNP2Q9H175 543 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 CPVLQ9H3G5 476 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 FAM217BQ9NTX9 383 aaPredicted RBP17.51■□□□□ 0.39
LMNB1-203ENST00000460265 MROH7-TTC4A0A0A0MT08 1334 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 RTL9Q8NET4 1388 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 AXDND1Q5T1B0 1012 aaPredicted RBP17.51■□□□□ 0.39
LMNB1-203ENST00000460265 EPSTI1Q96J88 318 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 CWC15Q9P013 229 aaKnown RBP17.51■□□□□ 0.39
LMNB1-203ENST00000460265 NARFQ9UHQ1 456 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 TACC3Q9Y6A5 838 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 CHRM1P11229 460 aaPredicted RBP17.51■□□□□ 0.39
LMNB1-203ENST00000460265 GYS2P54840 703 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 NTRK3Q16288 839 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 CTR9Q6PD62 1173 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.51■□□□□ 0.39
LMNB1-203ENST00000460265 PLA2G4DQ86XP0 818 aa17.51■□□□□ 0.39
LMNB1-203ENST00000460265 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.5■□□□□ 0.39
LMNB1-203ENST00000460265 RPS6KA4O75676 772 aa17.5■□□□□ 0.39
LMNB1-203ENST00000460265 RBM5P52756 815 aaKnown RBP eCLIP17.5■□□□□ 0.39
LMNB1-203ENST00000460265 NFIXQ14938 502 aa17.5■□□□□ 0.39
LMNB1-203ENST00000460265 KLHL34Q8N239 644 aa17.5■□□□□ 0.39
LMNB1-203ENST00000460265 MYO1CO00159 1063 aa17.5■□□□□ 0.39
LMNB1-203ENST00000460265 KIF5BP33176 963 aa17.5■□□□□ 0.39
LMNB1-203ENST00000460265 POSTNQ15063 836 aa17.5■□□□□ 0.39
LMNB1-203ENST00000460265 BLZF1Q9H2G9 400 aa17.5■□□□□ 0.39
LMNB1-203ENST00000460265 USP17L3A6NCW0 530 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 USP17L4A6NCW7 530 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 USP17L1Q7RTZ2 530 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 SMYD4Q8IYR2 804 aaPredicted RBP17.49■□□□□ 0.39
LMNB1-203ENST00000460265 UIMC1Q96RL1 719 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 NFE2L3Q9Y4A8 694 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 MPHOSPH10O00566 681 aaKnown RBP17.49■□□□□ 0.39
LMNB1-203ENST00000460265 CBFA2T2O43439 604 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 USP27XA6NNY8 438 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 GSDMDP57764 484 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 TMCO3Q6UWJ1 677 aa17.49■□□□□ 0.39
LMNB1-203ENST00000460265 DCP1AQ9NPI6 582 aaPredicted RBP17.49■□□□□ 0.39
LMNB1-203ENST00000460265 ARGLU1Q9NWB6 273 aaPredicted RBP17.49■□□□□ 0.39
LMNB1-203ENST00000460265 TXLNAP40222 546 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 NSUN4Q96CB9 384 aaKnown RBP17.48■□□□□ 0.39
LMNB1-203ENST00000460265 MRFAP1L1Q96HT8 127 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 ZNF446Q9NWS9 450 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 GEMIN8Q9NWZ8 242 aaKnown RBP17.48■□□□□ 0.39
LMNB1-203ENST00000460265 CASQ1P31415 396 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 SF3B3Q15393 1217 aaKnown RBP17.48■□□□□ 0.39
LMNB1-203ENST00000460265 ZSCAN26Q16670 478 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 ZNF804AQ7Z570 1209 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 EEF2KMTQ96G04 330 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 YY1AP1Q9H869 796 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 SIPA1L3O60292 1781 aaPredicted RBP17.48■□□□□ 0.39
LMNB1-203ENST00000460265 PPP6R2O75170 966 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 PTGDRQ13258 359 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 TTC38Q5R3I4 469 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 RBM43Q6ZSC3 357 aaKnown RBP17.48■□□□□ 0.39
LMNB1-203ENST00000460265 TEX11Q8IYF3 940 aa17.48■□□□□ 0.39
LMNB1-203ENST00000460265 WDR19Q8NEZ3 1342 aa17.47■□□□□ 0.39
LMNB1-203ENST00000460265 ZSCAN29Q8IWY8 852 aaPredicted RBP17.47■□□□□ 0.39
LMNB1-203ENST00000460265 PCMTD1Q96MG8 357 aaPredicted RBP17.47■□□□□ 0.39
LMNB1-203ENST00000460265 DACH1Q9UI36 760 aa17.47■□□□□ 0.39
LMNB1-203ENST00000460265 PNPLA7Q6ZV29 1317 aa17.47■□□□□ 0.39
LMNB1-203ENST00000460265 LDHCP07864 332 aa17.47■□□□□ 0.39
LMNB1-203ENST00000460265 PNMA1Q8ND90 353 aa17.47■□□□□ 0.39
LMNB1-203ENST00000460265 NEMFO60524 1076 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 CALM1P0DP23 149 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 CALM2P0DP24 149 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 CALM3P0DP25 149 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 ARHGAP29Q52LW3 1261 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 NOM1Q5C9Z4 860 aaKnown RBP17.46■□□□□ 0.39
LMNB1-203ENST00000460265 SOGA3Q5TF21 947 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 PNMA6AP0CW24 399 aaPredicted RBP17.46■□□□□ 0.39
LMNB1-203ENST00000460265 ST5P78524 1137 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 ICE2Q659A1 982 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 SH3RF3Q8TEJ3 882 aaPredicted RBP17.46■□□□□ 0.39
LMNB1-203ENST00000460265 PRR29P0C7W0 189 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 CLCN6P51797 869 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 MFSD14BQ5SR56 506 aa17.46■□□□□ 0.39
LMNB1-203ENST00000460265 FOXP1Q9H334 677 aaPredicted RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms