RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	SMCR8	Q8TEV9	937 aa	Predicted RBP	10.54	□□□□□ -0.72
RFX3-209	ENST00000451859	PTCD2	Q8WV60	388 aa	Known RBP	10.54	□□□□□ -0.72
RFX3-209	ENST00000451859	DHX36	Q9H2U1	1008 aa	Known RBP	10.54	□□□□□ -0.72
RFX3-209	ENST00000451859	PI4KB	Q9UBF8	816 aa		10.54	□□□□□ -0.72
RFX3-209	ENST00000451859	HERC5	Q9UII4	1024 aa	Known RBP	10.54	□□□□□ -0.72
RFX3-209	ENST00000451859	TAOK2	Q9UL54	1235 aa		10.54	□□□□□ -0.72
RFX3-209	ENST00000451859	ADGRA2	Q96PE1	1338 aa		10.54	□□□□□ -0.72
RFX3-209	ENST00000451859	STK25	O00506	426 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	RAB11FIP3	O75154	756 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	HLA-DOA	P06340	250 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	CTGF	P29279	349 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	HMGCS2	P54868	508 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	TREML2	Q5T2D2	321 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	ZNF280C	Q8ND82	737 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	SH3TC2	Q8TF17	1288 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	TRIM47	Q96LD4	638 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	BOLA2	Q9H3K6	86 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	DNAJC18	Q9H819	358 aa		10.53	□□□□□ -0.72
RFX3-209	ENST00000451859	MAGEB6P1	A0A0J9YX57	407 aa		10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	PDE6A	P16499	860 aa		10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	JAG1	P78504	1218 aa		10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	TTF1	Q15361	905 aa	Predicted RBP	10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	SLFNL1	Q499Z3	407 aa		10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	SLC9C2	Q5TAH2	1124 aa		10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	KCTD12	Q96CX2	325 aa	Known RBP	10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	ZNF532	Q9HCE3	1301 aa		10.52	□□□□□ -0.73
RFX3-209	ENST00000451859	PLXNB2	O15031	1838 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	USP17L5	A8MUK1	530 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	ASNS	P08243	561 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	BCR	P11274	1271 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	OSBP	P22059	807 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	MTMR2	Q13614	643 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	ANKRD13C	Q8N6S4	541 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	ARMC5	Q96C12	935 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	LRRCC1	Q9C099	1032 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	AS3MT	Q9HBK9	375 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	PAG1	Q9NWQ8	432 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	ZBTB21	Q9ULJ3	1066 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	AGTPBP1	Q9UPW5	1226 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	MYPN	Q86TC9	1320 aa		10.51	□□□□□ -0.73
RFX3-209	ENST00000451859	MYH4	Q9Y623	1939 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	COL11A1	P12107	1806 aa	Predicted RBP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	PPP1R37	O75864	691 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	GH2	P01242	217 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	POLR3D	P05423	398 aa	Predicted RBP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	EN2	P19622	333 aa	Predicted RBP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	FCGRT	P55899	365 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	ZYX	Q15942	572 aa	Known RBP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	TSHZ3	Q63HK5	1081 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	NBPF11	Q86T75	865 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	CERS3	Q8IU89	383 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	FOXP4	Q8IVH2	680 aa	Predicted RBP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	LCORL	Q8N3X6	602 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	RAET1E	Q8TD07	263 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	SDR42E1	Q8WUS8	393 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	ZNF333	Q96JL9	665 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	RIOK1	Q9BRS2	568 aa	Known RBP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	ARMT1	Q9H993	441 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	SRRD	Q9UH36	339 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	PNMA3	Q9UL41	463 aa		10.5	□□□□□ -0.73
RFX3-209	ENST00000451859	PARP14	Q460N5	1801 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	TNPO2	O14787	897 aa	Known RBP	10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	IGSF3	O75054	1194 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	MBD4	O95243	580 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	GNRH1	P01148	92 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	CHGB	P05060	677 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	ATP5J	P18859	108 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	HOXD10	P28358	340 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	PRKCZ	Q05513	592 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	RAB3GAP1	Q15042	981 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	FEZ1	Q99689	392 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	HAUS7	Q99871	368 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	TBC1D2	Q9BYX2	928 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	MCM9	Q9NXL9	1143 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	TMOD4	Q9NZQ9	345 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	BIN2	Q9UBW5	565 aa	Predicted RBP	10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	SERPINB13	Q9UIV8	391 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	GABRQ	Q9UN88	632 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	SLC45A1	Q9Y2W3	748 aa		10.49	□□□□□ -0.73
RFX3-209	ENST00000451859	TCRBV5S4A2T	A0A5A2	114 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	PRKAB2	O43741	272 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	PEX10	O60683	326 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	CYP2D6	P10635	497 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	GRK4	P32298	578 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	ADD2	P35612	726 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	PLCD1	P51178	756 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	RRP1	P56182	461 aa	Known RBP	10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	IRX3	P78415	501 aa	Predicted RBP	10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	PABPC4	Q13310	644 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	MTFR1	Q15390	333 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	TTC6	Q86TZ1	520 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	METTL16	Q86W50	562 aa	Known RBP	10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	WDR18	Q9BV38	432 aa		10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	ZNFX1	Q9P2E3	1918 aa	Known RBP	10.48	□□□□□ -0.73
RFX3-209	ENST00000451859	MPHOSPH10	O00566	681 aa	Known RBP	10.47	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms