RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 NLGN2Q8NFZ4 835 aa16.56■□□□□ 0.24
USP39-207ENST00000450066 AIFM3Q96NN9 605 aa16.56■□□□□ 0.24
USP39-207ENST00000450066 ZBTB12Q9Y330 459 aaPredicted RBP16.56■□□□□ 0.24
USP39-207ENST00000450066 ENTPD3O75355 529 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 KIF5BP33176 963 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 ATL3Q6DD88 541 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 CIAPIN1Q6FI81 312 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 TMTC3Q6ZXV5 915 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 PI4KBQ9UBF8 816 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 STX8Q9UNK0 236 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 ELP1O95163 1332 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 TCP10Q12799 353 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 TRIM29Q14134 588 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 TNIP1Q15025 636 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 DLGAP5Q15398 846 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 CMTR1Q8N1G2 835 aaKnown RBP16.55■□□□□ 0.24
USP39-207ENST00000450066 CCDC82Q8N4S0 544 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 MTMR14Q8NCE2 650 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 TMEM47Q9BQJ4 181 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 GZF1Q9H116 711 aaPredicted RBP16.55■□□□□ 0.24
USP39-207ENST00000450066 GJB4Q9NTQ9 266 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 CFAP45Q9UL16 551 aa16.55■□□□□ 0.24
USP39-207ENST00000450066 COL2A1P02458 1487 aaPredicted RBP16.55■□□□□ 0.24
USP39-207ENST00000450066 PRPF3O43395 683 aaKnown RBP16.54■□□□□ 0.24
USP39-207ENST00000450066 PLEKHA8P1O95397 391 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 SHMT1P34896 483 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 MMP14P50281 582 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 UBE2HP62256 183 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 KRT40Q6A162 431 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 BRAPQ7Z569 592 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 ATRNL1Q5VV63 1379 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 ARFGEF1Q9Y6D6 1849 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 DDTLA6NHG4 134 aaPredicted RBP16.54■□□□□ 0.24
USP39-207ENST00000450066 GADD45BO75293 160 aaPredicted RBP16.54■□□□□ 0.24
USP39-207ENST00000450066 GUCY1A2P33402 732 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 AKAP17AQ02040 695 aaKnown RBP16.54■□□□□ 0.24
USP39-207ENST00000450066 SH3BP5LQ7L8J4 393 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 CEP95Q96GE4 821 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.54■□□□□ 0.24
USP39-207ENST00000450066 TMOD2Q9NZR1 351 aa16.54■□□□□ 0.24
USP39-207ENST00000450066 TFIP11Q9UBB9 837 aaKnown RBP16.54■□□□□ 0.24
USP39-207ENST00000450066 UBE2Q2LH0YL09 131 aa16.53■□□□□ 0.24
USP39-207ENST00000450066 KIF23Q02241 960 aaPredicted RBP16.53■□□□□ 0.24
USP39-207ENST00000450066 FOXP4Q8IVH2 680 aaPredicted RBP16.53■□□□□ 0.24
USP39-207ENST00000450066 ZSCAN29Q8IWY8 852 aaPredicted RBP16.53■□□□□ 0.24
USP39-207ENST00000450066 IGKV6D-41A0A0C4DH26 115 aa16.52■□□□□ 0.24
USP39-207ENST00000450066 TOP1P11387 765 aaKnown RBP16.52■□□□□ 0.24
USP39-207ENST00000450066 AKR1B1P15121 316 aa16.52■□□□□ 0.24
USP39-207ENST00000450066 GRM4Q14833 912 aa16.52■□□□□ 0.24
USP39-207ENST00000450066 METTL16Q86W50 562 aaKnown RBP16.52■□□□□ 0.24
USP39-207ENST00000450066 SRBD1Q8N5C6 995 aaKnown RBP16.52■□□□□ 0.24
USP39-207ENST00000450066 SPATA32Q96LK8 384 aa16.52■□□□□ 0.24
USP39-207ENST00000450066 CCDC17Q96LX7 622 aa16.52■□□□□ 0.24
USP39-207ENST00000450066 ZNF396Q96N95 335 aaPredicted RBP16.52■□□□□ 0.24
USP39-207ENST00000450066 MTMR4Q9NYA4 1195 aa16.52■□□□□ 0.24
USP39-207ENST00000450066 GNAQP50148 359 aa16.52■□□□□ 0.23
USP39-207ENST00000450066 LEO1Q8WVC0 666 aaPredicted RBP16.52■□□□□ 0.23
USP39-207ENST00000450066 DNAJC18Q9H819 358 aa16.52■□□□□ 0.23
USP39-207ENST00000450066 ZNF70Q9UC06 446 aaPredicted RBP16.52■□□□□ 0.23
USP39-207ENST00000450066 V9GY48 417 aaPredicted RBP16.52■□□□□ 0.23
USP39-207ENST00000450066 MYH8P13535 1937 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 RPS12P25398 132 aaKnown RBP16.51■□□□□ 0.23
USP39-207ENST00000450066 RASSF7Q02833 373 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 PKN1Q16512 942 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 SPDYE2Q495Y8 402 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 FKBP1CQ5VVH2 108 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 CAVIN1Q6NZI2 390 aaKnown RBP16.51■□□□□ 0.23
USP39-207ENST00000450066 CNTNAP5Q8WYK1 1306 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 MYH15Q9Y2K3 1946 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 SIPA1L1O43166 1804 aa16.51■□□□□ 0.23
USP39-207ENST00000450066 U2AF2P26368 475 aaKnown RBP eCLIP16.5■□□□□ 0.23
USP39-207ENST00000450066 PPP4R3BQ5MIZ7 849 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 TATDN1Q6P1N9 297 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 ZBED3Q96IU2 234 aaPredicted RBP16.5■□□□□ 0.23
USP39-207ENST00000450066 MAD2L2Q9UI95 211 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 UTRNP46939 3433 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 KIF28PB7ZC32 967 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 FZD9O00144 591 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 MMP1P03956 469 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 XBP1P17861 261 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 LZTS2Q9BRK4 669 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 TRIM34Q9BYJ4 488 aa16.5■□□□□ 0.23
USP39-207ENST00000450066 RBM27Q9P2N5 1060 aaKnown RBP16.5■□□□□ 0.23
USP39-207ENST00000450066 PALM3A6NDB9 673 aaPredicted RBP16.49■□□□□ 0.23
USP39-207ENST00000450066 TTLL1O95922 423 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 PRELPP51888 382 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 SAFBQ15424 915 aaKnown RBP eCLIP16.49■□□□□ 0.23
USP39-207ENST00000450066 FAM151AQ8WW52 585 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 RCOR1Q9UKL0 485 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 CLRN2A0PK11 232 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 TCP10L2B9ZVM9 353 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 MYO1BO43795 1136 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 ZNF280AP59817 542 aaPredicted RBP16.49■□□□□ 0.23
USP39-207ENST00000450066 GNL2Q13823 731 aaKnown RBP16.49■□□□□ 0.23
USP39-207ENST00000450066 MYSM1Q5VVJ2 828 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 STAG2Q8N3U4 1231 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 USP28Q96RU2 1077 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 CSRNP1Q96S65 589 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 MYOZ2Q9NPC6 264 aa16.49■□□□□ 0.23
USP39-207ENST00000450066 EIF6P56537 245 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms