RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 CYP2E1P05181 493 aaPredicted RBP17.68■□□□□ 0.42
HMGN1-208ENST00000443046 CCNA1P78396 465 aa17.68■□□□□ 0.42
HMGN1-208ENST00000443046 USP17L24Q0WX57 530 aa17.68■□□□□ 0.42
HMGN1-208ENST00000443046 MFSD14CQ5VZR4 134 aa17.68■□□□□ 0.42
HMGN1-208ENST00000443046 CATSPERGQ6ZRH7 1159 aa17.68■□□□□ 0.42
HMGN1-208ENST00000443046 GPR108Q9NPR9 543 aa17.68■□□□□ 0.42
HMGN1-208ENST00000443046 SNRKQ9NRH2 765 aa17.68■□□□□ 0.42
HMGN1-208ENST00000443046 TTC28Q96AY4 2481 aa17.67■□□□□ 0.42
HMGN1-208ENST00000443046 PNMA6EA0A0J9YXQ4 647 aa17.67■□□□□ 0.42
HMGN1-208ENST00000443046 DNM1LO00429 736 aa17.67■□□□□ 0.42
HMGN1-208ENST00000443046 GLRX3O76003 335 aaKnown RBP17.67■□□□□ 0.42
HMGN1-208ENST00000443046 GH2P01242 217 aa17.67■□□□□ 0.42
HMGN1-208ENST00000443046 RARSP54136 660 aaKnown RBP17.67■□□□□ 0.42
HMGN1-208ENST00000443046 G3BP1Q13283 466 aaKnown RBP eCLIP17.67■□□□□ 0.42
HMGN1-208ENST00000443046 GRB14Q14449 540 aa17.67■□□□□ 0.42
HMGN1-208ENST00000443046 TRPV1Q8NER1 839 aa17.67■□□□□ 0.42
HMGN1-208ENST00000443046 ZNF512BQ96KM6 892 aaPredicted RBP17.67■□□□□ 0.42
HMGN1-208ENST00000443046 LBHD1Q9BQE6 289 aaPredicted RBP17.67■□□□□ 0.42
HMGN1-208ENST00000443046 TRIM34Q9BYJ4 488 aa17.67■□□□□ 0.42
HMGN1-208ENST00000443046 MYH1P12882 1939 aa17.66■□□□□ 0.42
HMGN1-208ENST00000443046 HLA-DOAP06340 250 aa17.66■□□□□ 0.42
HMGN1-208ENST00000443046 ATF7IPQ6VMQ6 1270 aa17.66■□□□□ 0.42
HMGN1-208ENST00000443046 NPLOC4Q8TAT6 608 aa17.66■□□□□ 0.42
HMGN1-208ENST00000443046 FAM161BQ96MY7 647 aa17.66■□□□□ 0.42
HMGN1-208ENST00000443046 KIAA1683Q9H0B3 1180 aa17.66■□□□□ 0.42
HMGN1-208ENST00000443046 BTBD7Q9P203 1132 aa17.66■□□□□ 0.42
HMGN1-208ENST00000443046 SAP30BPQ9UHR5 308 aaKnown RBP17.66■□□□□ 0.42
HMGN1-208ENST00000443046 ZNF316A6NFI3 1004 aaPredicted RBP17.65■□□□□ 0.42
HMGN1-208ENST00000443046 GNAI2P04899 355 aa17.65■□□□□ 0.42
HMGN1-208ENST00000443046 ATN1P54259 1190 aaPredicted RBP17.65■□□□□ 0.42
HMGN1-208ENST00000443046 USP14P54578 494 aa17.65■□□□□ 0.42
HMGN1-208ENST00000443046 RTP1P59025 263 aa17.65■□□□□ 0.42
HMGN1-208ENST00000443046 ZNF697Q5TEC3 545 aa17.65■□□□□ 0.42
HMGN1-208ENST00000443046 EHD4Q9H223 541 aa17.65■□□□□ 0.42
HMGN1-208ENST00000443046 NDUFB9Q9Y6M9 179 aa17.65■□□□□ 0.42
HMGN1-208ENST00000443046 CYBAP13498 195 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 VCAM1P19320 739 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 CYP2C19P33261 490 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 DYNLL1P63167 89 aaKnown RBP17.64■□□□□ 0.41
HMGN1-208ENST00000443046 ATP2B2Q01814 1243 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 TNNI3KQ59H18 835 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 CDX2Q99626 313 aaPredicted RBP17.64■□□□□ 0.41
HMGN1-208ENST00000443046 DBNDD2Q9BQY9 259 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 SEMA6BQ9H3T3 888 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 PIH1D3Q9NQM4 214 aaKnown RBP17.64■□□□□ 0.41
HMGN1-208ENST00000443046 FPGT-TNNI3KV9GXZ4 949 aa17.64■□□□□ 0.41
HMGN1-208ENST00000443046 ZNF236Q9UL36 1845 aa17.63■□□□□ 0.41
HMGN1-208ENST00000443046 SPDYE16A6NNV3 312 aaPredicted RBP17.63■□□□□ 0.41
HMGN1-208ENST00000443046 SNX17Q15036 470 aa17.63■□□□□ 0.41
HMGN1-208ENST00000443046 SHHQ15465 462 aa17.63■□□□□ 0.41
HMGN1-208ENST00000443046 CCDC158Q5M9N0 1113 aa17.63■□□□□ 0.41
HMGN1-208ENST00000443046 TTC39AQ5SRH9 613 aa17.63■□□□□ 0.41
HMGN1-208ENST00000443046 ACER1Q8TDN7 264 aa17.63■□□□□ 0.41
HMGN1-208ENST00000443046 CWC22Q9HCG8 908 aaKnown RBP17.63■□□□□ 0.41
HMGN1-208ENST00000443046 SERPINB13Q9UIV8 391 aa17.63■□□□□ 0.41
HMGN1-208ENST00000443046 CNGA1P29973 690 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 ZAP70P43403 619 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 POLA2Q14181 598 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 ZYXQ15942 572 aaKnown RBP17.62■□□□□ 0.41
HMGN1-208ENST00000443046 C9orf50Q5SZB4 431 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 OLFML2BQ68BL8 750 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 SLC39A5Q6ZMH5 540 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 PRKAG2Q9UGJ0 569 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 IVNS1ABPQ9Y6Y0 642 aa17.62■□□□□ 0.41
HMGN1-208ENST00000443046 TRIM27P14373 513 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 GUCY1A2P33402 732 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 GJC2Q5T442 439 aaPredicted RBP17.61■□□□□ 0.41
HMGN1-208ENST00000443046 WDR78Q5VTH9 848 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 C1orf53Q5VUE5 145 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 CERS3Q8IU89 383 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 ARRDC4Q8NCT1 418 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 FEZ1Q99689 392 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 CHD9Q3L8U1 2897 aa17.61■□□□□ 0.41
HMGN1-208ENST00000443046 STRNO43815 780 aa17.6■□□□□ 0.41
HMGN1-208ENST00000443046 CYP7A1P22680 504 aa17.6■□□□□ 0.41
HMGN1-208ENST00000443046 SMAD3P84022 425 aaKnown RBP17.6■□□□□ 0.41
HMGN1-208ENST00000443046 RAB3GAP1Q15042 981 aa17.6■□□□□ 0.41
HMGN1-208ENST00000443046 ABCB5Q2M3G0 1257 aa17.6■□□□□ 0.41
HMGN1-208ENST00000443046 CERKLQ49MI3 558 aaPredicted RBP17.6■□□□□ 0.41
HMGN1-208ENST00000443046 SSH3Q8TE77 659 aa17.6■□□□□ 0.41
HMGN1-208ENST00000443046 TTYH1Q9H313 450 aaPredicted RBP17.6■□□□□ 0.41
HMGN1-208ENST00000443046 TNNQ9UQP3 1299 aa17.6■□□□□ 0.41
HMGN1-208ENST00000443046 ATP11BQ9Y2G3 1177 aa17.6■□□□□ 0.41
HMGN1-208ENST00000443046 A0A0G2JMZ2 1700 aa17.59■□□□□ 0.41
HMGN1-208ENST00000443046 SEPT4O43236 478 aa17.59■□□□□ 0.41
HMGN1-208ENST00000443046 SHMT1P34896 483 aa17.59■□□□□ 0.41
HMGN1-208ENST00000443046 MAFAQ8NHW3 353 aaPredicted RBP17.59■□□□□ 0.41
HMGN1-208ENST00000443046 MOV10L1Q9BXT6 1211 aaKnown RBP17.59■□□□□ 0.41
HMGN1-208ENST00000443046 RPAP3Q9H6T3 665 aaPredicted RBP17.59■□□□□ 0.41
HMGN1-208ENST00000443046 PDLIM7Q9NR12 457 aa17.59■□□□□ 0.41
HMGN1-208ENST00000443046 DBNLQ9UJU6 430 aaKnown RBP17.59■□□□□ 0.41
HMGN1-208ENST00000443046 TRIM43BA6NCK2 446 aa17.58■□□□□ 0.4
HMGN1-208ENST00000443046 COBLO75128 1261 aa17.58■□□□□ 0.4
HMGN1-208ENST00000443046 ADORA2AP29274 412 aa17.58■□□□□ 0.4
HMGN1-208ENST00000443046 TMED8Q6PL24 325 aaPredicted RBP17.58■□□□□ 0.4
HMGN1-208ENST00000443046 TTC6Q86TZ1 520 aa17.58■□□□□ 0.4
HMGN1-208ENST00000443046 MIGA1Q8NAN2 632 aa17.58■□□□□ 0.4
HMGN1-208ENST00000443046 SHCBP1Q8NEM2 672 aa17.58■□□□□ 0.4
HMGN1-208ENST00000443046 BADQ92934 168 aa17.58■□□□□ 0.4
HMGN1-208ENST00000443046 TRIM43Q96BQ3 446 aaPredicted RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms