RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 NUP133Q8WUM0 1156 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 SYT17Q9BSW7 474 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 DDX11L8A8MPP1 907 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 CALM1P0DP23 149 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 CALM2P0DP24 149 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 CALM3P0DP25 149 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 CDC27P30260 824 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 ZSCAN30Q86W11 494 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 CNPY4Q8N129 248 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 MTMR14Q8NCE2 650 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 PPP1R9BQ96SB3 815 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 EHD4Q9H223 541 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 TCP11L1Q9NUJ3 509 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 ORC3Q9UBD5 711 aaPredicted RBP9.39□□□□□ -0.91
CCDC39-201ENST00000442201 ATP6V1DQ9Y5K8 247 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 FER1L6Q2WGJ9 1857 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 NAV1Q8NEY1 1877 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 LAMB1P07942 1786 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 H3BQV1 296 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 FZD9O00144 591 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 PPFIA3O75145 1194 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 IFFO2Q5TF58 517 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 ZFPM1Q8IX07 1006 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 CRACR2BQ8N4Y2 399 aaPredicted RBP9.39□□□□□ -0.91
CCDC39-201ENST00000442201 FANCBQ8NB91 859 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 NEDD1Q8NHV4 660 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 PI4KBQ9UBF8 816 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 NID2Q14112 1375 aa9.39□□□□□ -0.91
CCDC39-201ENST00000442201 MYO1BO43795 1136 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 DDAH1O94760 285 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 F13A1P00488 732 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 PRELPP51888 382 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 RCSD1Q6JBY9 416 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 KAT14Q9H8E8 782 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 IL17RBQ9NRM6 502 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 FAM217BQ9NTX9 383 aaPredicted RBP9.38□□□□□ -0.91
CCDC39-201ENST00000442201 TAOK2Q9UL54 1235 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 ZNF646O15015 1829 aaPredicted RBP9.38□□□□□ -0.91
CCDC39-201ENST00000442201 CLRN2A0PK11 232 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 FDPSP14324 419 aaKnown RBP9.38□□□□□ -0.91
CCDC39-201ENST00000442201 LMNB1P20700 586 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 IRX5P78411 483 aaPredicted RBP9.38□□□□□ -0.91
CCDC39-201ENST00000442201 AXDND1Q5T1B0 1012 aaPredicted RBP9.38□□□□□ -0.91
CCDC39-201ENST00000442201 ANKS1AQ92625 1134 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 ZNF70Q9UC06 446 aaPredicted RBP9.38□□□□□ -0.91
CCDC39-201ENST00000442201 STX8Q9UNK0 236 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 GJA3Q9Y6H8 435 aa9.38□□□□□ -0.91
CCDC39-201ENST00000442201 DDX60LQ5H9U9 1706 aaKnown RBP9.38□□□□□ -0.91
CCDC39-201ENST00000442201 DDTLA6NHG4 134 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 IFNAR1P17181 557 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 TROAPQ12815 778 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 NTRK3Q16288 839 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 SPDYE2Q495Y8 402 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 FOXP4Q8IVH2 680 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 DPF2Q92785 391 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 TRIM44Q96DX7 344 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 TRIM34Q9BYJ4 488 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 ADAMTSL1Q8N6G6 1762 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 PTMSP20962 102 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 CDK11BP21127 795 aaKnown RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 DNTTIP2Q5QJE6 756 aaKnown RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 FKBP1CQ5VVH2 108 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 MCTP1Q6DN14 999 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 CDC37L1Q7L3B6 337 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 CTCFLQ8NI51 663 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 MYOZ2Q9NPC6 264 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 RBM28Q9NW13 759 aaKnown RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 ATRNL1Q5VV63 1379 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 PSME4Q14997 1843 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 TCP10L2B9ZVM9 353 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 ZNF500O60304 480 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 GMPSP49915 693 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 ZNF280AP59817 542 aaPredicted RBP9.37□□□□□ -0.91
CCDC39-201ENST00000442201 SH3BP5LQ7L8J4 393 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 TRIM22Q8IYM9 498 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 PNMA1Q8ND90 353 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 PHKBQ93100 1093 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 CCDC17Q96LX7 622 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 VEZTQ9HBM0 779 aa9.37□□□□□ -0.91
CCDC39-201ENST00000442201 UQCRHLA0A096LP55 91 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 UQCRHP07919 91 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 SHMT1P34896 483 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 SSRP1Q08945 709 aaKnown RBP9.36□□□□□ -0.91
CCDC39-201ENST00000442201 FOXD4L6Q3SYB3 417 aaPredicted RBP9.36□□□□□ -0.91
CCDC39-201ENST00000442201 FOXD4L3Q6VB84 417 aaPredicted RBP9.36□□□□□ -0.91
CCDC39-201ENST00000442201 FERMT3Q86UX7 667 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 FAM151AQ8WW52 585 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 ZBED3Q96IU2 234 aaPredicted RBP9.36□□□□□ -0.91
CCDC39-201ENST00000442201 WNT10BO00744 389 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 KIF5BP33176 963 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 FOSBP53539 338 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 HS1BP3Q53T59 392 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 CEP95Q96GE4 821 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 C8orf76Q96K31 380 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 CSRNP1Q96S65 589 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 SLC26A6Q9BXS9 759 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 STK36Q9NRP7 1315 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 PLIN4Q96Q06 1357 aa9.36□□□□□ -0.91
CCDC39-201ENST00000442201 COL2A1P02458 1487 aaPredicted RBP9.36□□□□□ -0.91
CCDC39-201ENST00000442201 FMNL1O95466 1100 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms