RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 CCDC17Q96LX7 622 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 MRPL44Q9H9J2 332 aaKnown RBP13.54□□□□□ -0.24
NEK1-201ENST00000439128 USP25Q9UHP3 1055 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 PALD1Q9ULE6 856 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 GOLGA6L9A6NEM1 432 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 NDC80O14777 642 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 ECE2O60344 883 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 ATP5JP18859 108 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 MICAL1Q8TDZ2 1067 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 COA7Q96BR5 231 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 STK25O00506 426 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 GAS8O95995 478 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 CD19P15391 556 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 GABPAQ06546 454 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 PNMA1Q8ND90 353 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 HAUS7Q99871 368 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 NARFQ9UHQ1 456 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 AKT3Q9Y243 479 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 GOLGA6L7A0A1B0GV03 622 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 SASH1O94885 1247 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 ADORA1P30542 326 aa13.54□□□□□ -0.24
NEK1-201ENST00000439128 TNS3Q68CZ2 1445 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 RNASELQ05823 741 aaKnown RBP13.53□□□□□ -0.24
NEK1-201ENST00000439128 SKIV2LQ15477 1246 aaKnown RBP13.53□□□□□ -0.24
NEK1-201ENST00000439128 HERC4Q5GLZ8 1057 aaPredicted RBP13.53□□□□□ -0.24
NEK1-201ENST00000439128 RIOK1Q9BRS2 568 aaKnown RBP13.53□□□□□ -0.24
NEK1-201ENST00000439128 FTOQ9C0B1 505 aaKnown RBP eCLIP13.53□□□□□ -0.24
NEK1-201ENST00000439128 VPS54Q9P1Q0 977 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 A0A0G2JLW4 131 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 GSDMDP57764 484 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 UBXN2AP68543 259 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 GTF3C6Q969F1 213 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 KCNJ14Q9UNX9 436 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 ERCC6L2Q5T890 1561 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 UQCRHP07919 91 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 ADRA2BP18089 450 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 TNNI1P19237 187 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 RASA3Q14644 834 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 CNNM4Q6P4Q7 775 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 PLA2G4DQ86XP0 818 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 TEKT3Q9BXF9 490 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 KLRF2D3W0D1 207 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 EXOC3O60645 756 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 POLGP54098 1239 aaPredicted RBP13.53□□□□□ -0.24
NEK1-201ENST00000439128 PPP2R5BQ15173 497 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 KCTD1Q719H9 257 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 CMTR1Q8N1G2 835 aaKnown RBP13.53□□□□□ -0.24
NEK1-201ENST00000439128 ATP6V0A2Q9Y487 856 aa13.53□□□□□ -0.24
NEK1-201ENST00000439128 PER1O15534 1290 aaPredicted RBP13.52□□□□□ -0.24
NEK1-201ENST00000439128 MYL3P08590 195 aa13.52□□□□□ -0.24
NEK1-201ENST00000439128 P4HA1P13674 534 aa13.52□□□□□ -0.24
NEK1-201ENST00000439128 BEND3Q5T5X7 828 aa13.52□□□□□ -0.24
NEK1-201ENST00000439128 RTEL1Q9NZ71 1219 aa13.52□□□□□ -0.24
NEK1-201ENST00000439128 KCNG1Q9UIX4 513 aa13.52□□□□□ -0.24
NEK1-201ENST00000439128 AGTPBP1Q9UPW5 1226 aa13.52□□□□□ -0.24
NEK1-201ENST00000439128 KIAA0754O94854 1291 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 VPS72Q15906 364 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 CFAP58Q5T655 872 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 TBC1D9BQ66K14 1250 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 IGSF1Q8N6C5 1336 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 DACT1Q9NYF0 836 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 CHRNA5P30532 468 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 DYNLL1P63167 89 aaKnown RBP13.52□□□□□ -0.25
NEK1-201ENST00000439128 ZNF654Q8IZM8 581 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 RETREG2Q8NC44 543 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 GBP3Q9H0R5 595 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 ZSCAN20P17040 1043 aaPredicted RBP13.52□□□□□ -0.25
NEK1-201ENST00000439128 ATG3Q9NT62 314 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 CTNND2Q9UQB3 1225 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 GCC2Q8IWJ2 1684 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 ADGBQ8N7X0 1667 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 MAGI3Q5TCQ9 1506 aa13.52□□□□□ -0.25
NEK1-201ENST00000439128 KIAA1841Q6NSI8 718 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 AOPEPQ8N6M6 819 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 LMBR1Q8WVP7 490 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 SELENOOQ9BVL4 669 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 DHX36Q9H2U1 1008 aaKnown RBP13.51□□□□□ -0.25
NEK1-201ENST00000439128 LIG4P49917 911 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 MAP9Q49MG5 647 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 CLEC4GQ6UXB4 293 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 EHBP1Q8NDI1 1231 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 PI4KBQ9UBF8 816 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 KIF2AO00139 706 aaPredicted RBP13.51□□□□□ -0.25
NEK1-201ENST00000439128 SREK1Q8WXA9 508 aaKnown RBP13.51□□□□□ -0.25
NEK1-201ENST00000439128 WRNIP1Q96S55 665 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 PCDHA1Q9Y5I3 950 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 COL15A1P39059 1388 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 ATF7P17544 494 aaPredicted RBP13.51□□□□□ -0.25
NEK1-201ENST00000439128 ANO6Q4KMQ2 910 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 CABP7Q86V35 215 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 NSMCE1Q8WV22 266 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 MMS19Q96T76 1030 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 INCENPQ9NQS7 918 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 ATP7BP35670 1465 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 MYOM2P54296 1465 aa13.51□□□□□ -0.25
NEK1-201ENST00000439128 E7EWF7 191 aa13.5□□□□□ -0.25
NEK1-201ENST00000439128 TTLL1O95922 423 aa13.5□□□□□ -0.25
NEK1-201ENST00000439128 NELFCDQ8IXH7 590 aa13.5□□□□□ -0.25
NEK1-201ENST00000439128 TBC1D32Q96NH3 1257 aa13.5□□□□□ -0.25
NEK1-201ENST00000439128 ZNF341Q9BYN7 854 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms