RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 DCUN1D2Q6PH85 259 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 UBL4BQ8N7F7 174 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 PTH1RQ03431 593 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 A0A0D9SFI3 127 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.1■□□□□ 0.65
PTPRF-209ENST00000438120 NAP1L3Q99457 506 aaPredicted RBP19.1■□□□□ 0.65
PTPRF-209ENST00000438120 GLT8D2Q9H1C3 349 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 ANAPC4Q9UJX5 808 aa19.1■□□□□ 0.65
PTPRF-209ENST00000438120 SLAIN2Q9P270 581 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 MAGEA1P43355 309 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 CSRNP2Q9H175 543 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 TPD52P55327 224 aaPredicted RBP19.09■□□□□ 0.65
PTPRF-209ENST00000438120 KLHL30Q0D2K2 578 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 CRCPO75575 148 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 ATP5JP18859 108 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 PPP2R5CQ13362 524 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 DAAM2Q86T65 1068 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 ZNF654Q8IZM8 581 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 PAGR1Q9BTK6 254 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 ASIC3Q9UHC3 531 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 TTLL3Q9Y4R7 772 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 PCDHB13Q9Y5F0 798 aa19.09■□□□□ 0.65
PTPRF-209ENST00000438120 TUBB4BP68371 445 aa19.08■□□□□ 0.65
PTPRF-209ENST00000438120 TYW1BQ6NUM6 668 aa19.08■□□□□ 0.65
PTPRF-209ENST00000438120 HSPA1LP34931 641 aa19.08■□□□□ 0.65
PTPRF-209ENST00000438120 LRRC47Q8N1G4 583 aaKnown RBP19.08■□□□□ 0.65
PTPRF-209ENST00000438120 TESPA1A2RU30 521 aaPredicted RBP19.08■□□□□ 0.64
PTPRF-209ENST00000438120 TCP10L2B9ZVM9 353 aa19.08■□□□□ 0.64
PTPRF-209ENST00000438120 IRX3P78415 501 aaPredicted RBP19.08■□□□□ 0.64
PTPRF-209ENST00000438120 LRRC24Q50LG9 513 aa19.08■□□□□ 0.64
PTPRF-209ENST00000438120 KIAA0556O60303 1618 aa19.08■□□□□ 0.64
PTPRF-209ENST00000438120 ALDH3A1P30838 453 aa19.08■□□□□ 0.64
PTPRF-209ENST00000438120 DSCC1Q9BVC3 393 aa19.08■□□□□ 0.64
PTPRF-209ENST00000438120 DKC1O60832 514 aaKnown RBP eCLIP19.07■□□□□ 0.645e-7■■■■■ 33.7
PTPRF-209ENST00000438120 TNNI1P19237 187 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 RRAGAQ7L523 313 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 RIOK3O14730 519 aaKnown RBP19.07■□□□□ 0.64
PTPRF-209ENST00000438120 TECP42680 631 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 ACTN4O43707 911 aaKnown RBP19.07■□□□□ 0.64
PTPRF-209ENST00000438120 ADKP55263 362 aaKnown RBP19.07■□□□□ 0.64
PTPRF-209ENST00000438120 IL17REQ8NFR9 667 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 GLG1Q92896 1179 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 NUP58Q9BVL2 599 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 NACA2Q9H009 215 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 KDM2BQ8NHM5 1336 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 CLUL1Q15846 466 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 INTS8Q75QN2 995 aaKnown RBP19.07■□□□□ 0.64
PTPRF-209ENST00000438120 KIAA0825Q8IV33 1275 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 ERO1AQ96HE7 468 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 CYP2J2P51589 502 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 PTPROQ16827 1216 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 SMCR8Q8TEV9 937 aaPredicted RBP19.07■□□□□ 0.64
PTPRF-209ENST00000438120 LZTS2Q9BRK4 669 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 BCS1LQ9Y276 419 aa19.07■□□□□ 0.64
PTPRF-209ENST00000438120 GIGYF1O75420 1035 aaPredicted RBP19.06■□□□□ 0.64
PTPRF-209ENST00000438120 ELF2Q15723 593 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 IFNL3Q8IZI9 196 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 SUPT20HQ8NEM7 779 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 CCT6BQ92526 530 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 GPKOWQ92917 476 aaPredicted RBP eCLIP19.06■□□□□ 0.64
PTPRF-209ENST00000438120 EAF2Q96CJ1 260 aaPredicted RBP19.06■□□□□ 0.64
PTPRF-209ENST00000438120 CCDC94Q9BW85 323 aaPredicted RBP19.06■□□□□ 0.64
PTPRF-209ENST00000438120 ARPP21Q9UBL0 812 aaPredicted RBP19.06■□□□□ 0.64
PTPRF-209ENST00000438120 TCOF1Q13428 1488 aaKnown RBP19.06■□□□□ 0.64
PTPRF-209ENST00000438120 ALDH1B1P30837 517 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 CDAN1Q8IWY9 1227 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 USP44Q9H0E7 712 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 GAS7O60861 476 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 ZSCAN10Q96SZ4 725 aaPredicted RBP19.06■□□□□ 0.64
PTPRF-209ENST00000438120 PFDN4Q9NQP4 134 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 DNM2P50570 870 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 PRR16Q569H4 304 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 FAM102BQ5T8I3 360 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 METTL13Q8N6R0 699 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 TEKT1Q969V4 418 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 GABPAQ06546 454 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 SFMBT2Q5VUG0 894 aa19.06■□□□□ 0.64
PTPRF-209ENST00000438120 CERS3Q8IU89 383 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 PRPF6O94906 941 aaKnown RBP19.05■□□□□ 0.64
PTPRF-209ENST00000438120 GSPT1P15170 499 aaKnown RBP19.05■□□□□ 0.64
PTPRF-209ENST00000438120 ADD1P35611 737 aaKnown RBP19.05■□□□□ 0.64
PTPRF-209ENST00000438120 ALAS1P13196 640 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 TBC1D22AQ8WUA7 517 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 PHKG2P15735 406 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 MIER3Q7Z3K6 550 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 ZMYM4Q5VZL5 1548 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 AFAP1L1Q8TED9 768 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 GDAP1L1Q96MZ0 367 aa19.05■□□□□ 0.64
PTPRF-209ENST00000438120 NLRX1Q86UT6 975 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 LMBRD1Q9NUN5 540 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 CASC4Q6P4E1 433 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 GPBP1Q86WP2 473 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 C10orf67Q8IYJ2 551 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 ITIH3Q06033 890 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 TMTC1Q8IUR5 882 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 ANO3Q9BYT9 981 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 ERVV-2B6SEH9 535 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 BCRP11274 1271 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 PFKFB1P16118 471 aa19.04■□□□□ 0.64
PTPRF-209ENST00000438120 CCDC105Q8IYK2 499 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms