RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 LRRIQ3A6PVS8 624 aaPredicted RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 WDR46O15213 610 aaKnown RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 MGRN1O60291 552 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 ATP5JP18859 108 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CD53P19397 219 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 GUCY1B3Q02153 619 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 APOBRQ0VD83 1088 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 TUBA3CQ13748 450 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 BRD3Q15059 726 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 PPP2R5BQ15173 497 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CCDC14Q49A88 953 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CFAP157Q5JU67 520 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 NXNQ6DKJ4 435 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CCDC121Q6ZUS5 278 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 ZNF804AQ7Z570 1209 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 DAAM2Q86T65 1068 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 SESTD1Q86VW0 696 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CCDC146Q8IYE0 955 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 SYT2Q8N9I0 419 aaPredicted RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 KLHDC4Q8TBB5 520 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 DYDC1Q8WWB3 177 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 NAP1L4Q99733 375 aaKnown RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 HAUS7Q99871 368 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 TCF7L2Q9NQB0 619 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 DDX21Q9NR30 783 aaKnown RBP eCLIP7.28□□□□□ -1.24
MCF2-205ENST00000437564 CHPF2Q9P2E5 772 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 HESX1Q9UBX0 185 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 SH3GLB1Q9Y371 365 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 GAPVD1Q14C86 1478 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CCDC151A5D8V7 595 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 SHOX2O60902 331 aaPredicted RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 SASH3O75995 380 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 LDHCP07864 332 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 GNAQP50148 359 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CDK17Q00537 523 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 PTGDRQ13258 359 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 BLMHQ13867 455 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 DHX8Q14562 1220 aaKnown RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 SEPT2Q15019 361 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CCDC153Q494R4 210 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 HDXQ7Z353 690 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 BRSK2Q8IWQ3 736 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 RNF10Q8N5U6 811 aaKnown RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 GDAP1Q8TB36 358 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CCDC110Q8TBZ0 833 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CCHCR1Q8TD31 782 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 GIPC2Q8TF65 315 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 CACTINQ8WUQ7 758 aaKnown RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 ANKRD49Q8WVL7 239 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 ERP27Q96DN0 273 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 NR1H4Q96RI1 486 aaPredicted RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 SMC6Q96SB8 1091 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 GBP3Q9H0R5 595 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 DISC1Q9NRI5 854 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 BMP2KQ9NSY1 1161 aaPredicted RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 GGA2Q9UJY4 613 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 R3HDM2Q9Y2K5 976 aaKnown RBP7.28□□□□□ -1.24
MCF2-205ENST00000437564 KAT6BQ8WYB5 2073 aa7.28□□□□□ -1.24
MCF2-205ENST00000437564 RASSF10A6NK89 507 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 SPTLC2O15270 562 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 AKR1B10O60218 316 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 NPTXRO95502 500 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 GNAT2P19087 354 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 S100A1P23297 94 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 ALDH3A1P30838 453 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 TRIM71Q2Q1W2 868 aaKnown RBP7.27□□□□□ -1.25
MCF2-205ENST00000437564 CCDC40Q4G0X9 1142 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 CRELD2Q6UXH1 353 aaPredicted RBP7.27□□□□□ -1.25
MCF2-205ENST00000437564 MAATS1Q7Z4T9 603 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 RAB11FIP4Q86YS3 637 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 RELL1Q8IUW5 271 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 CCDC155Q8N6L0 562 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 ZFPM2Q8WW38 1151 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 MAIP1Q8WWC4 291 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 MAML1Q92585 1016 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 CENPOQ9BU64 300 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 TMUB1Q9BVT8 246 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 MOV10L1Q9BXT6 1211 aaKnown RBP7.27□□□□□ -1.25
MCF2-205ENST00000437564 EBF2Q9HAK2 575 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 PARVGQ9HBI0 331 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 MIS18AQ9NYP9 233 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 WDR35Q9P2L0 1181 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 PPP1R1BQ9UD71 204 aaPredicted RBP7.27□□□□□ -1.25
MCF2-205ENST00000437564 STK39Q9UEW8 545 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 GTF3C4Q9UKN8 822 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 MYPNQ86TC9 1320 aa7.27□□□□□ -1.25
MCF2-205ENST00000437564 ANKRD65E5RJM6 399 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 DNAJC8O75937 253 aaPredicted RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 GFPT2O94808 682 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 HNRNPCP07910 306 aaKnown RBP eCLIP7.26□□□□□ -1.25
MCF2-205ENST00000437564 VIMP08670 466 aaKnown RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 SYT1P21579 422 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 PRKAR2BP31323 418 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 MLH1P40692 756 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 FAM160A1Q05DH4 1040 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 PSME1Q06323 249 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 LRRFIP1Q32MZ4 808 aaKnown RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 BEND6Q5SZJ8 279 aaPredicted RBP7.26□□□□□ -1.25
MCF2-205ENST00000437564 PPFIBP1Q86W92 1011 aa7.26□□□□□ -1.25
MCF2-205ENST00000437564 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms