RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 GIMAP6Q6P9H5 292 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 SYT10Q6XYQ8 523 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 VIPAS39Q9H9C1 493 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 ZRANB1Q9UGI0 708 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 PDE6CP51160 858 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 RSPH3Q86UC2 560 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 TERB1Q8NA31 727 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 RBSNQ9H1K0 784 aa7.93□□□□□ -1.14
VPS53-204ENST00000437048 PTGS1P23219 599 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 IGBP1P78318 339 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 CCDC25Q86WR0 208 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 SENP1Q9P0U3 644 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 TEKT2Q9UIF3 430 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 TPX2Q9ULW0 747 aaKnown RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 DEXIO95424 95 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 SERPINB2P05120 415 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 DHX9Q08211 1270 aaKnown RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 PLCB4Q15147 1175 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 SAMD1Q6SPF0 538 aaPredicted RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 DTX3LQ8TDB6 740 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 NLRP2Q9NX02 1062 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 ARHGAP26Q9UNA1 814 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 CTNNA1P35221 906 aaKnown RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 DDX41Q9UJV9 622 aaKnown RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 E7EVH7 732 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 KCNA4P22459 653 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 NLRP12P59046 1061 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 ASIC1P78348 528 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 CHAMP1Q96JM3 812 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 FAM204AQ9H8W3 233 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 NEK2P51955 445 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 MCM10Q7L590 875 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 CTAGE3PQ8IX95 158 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 GIMAP4Q9NUV9 329 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 BLMP54132 1417 aaPredicted RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 PEG3Q9GZU2 1588 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 ABCA10Q8WWZ4 1543 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 STRN3Q13033 797 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 TADA2BQ86TJ2 420 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 BAIAP2L1Q9UHR4 511 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 CCDC188H7C350 402 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 OGFOD1Q8N543 542 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 GTF3C6Q969F1 213 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 CNPY3Q9BT09 278 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 IFIH1Q9BYX4 1025 aaKnown RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 DNAJC25Q9H1X3 360 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 GEMIN8Q9NWZ8 242 aaKnown RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 CDC23Q9UJX2 597 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 OCA2Q04671 838 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 CDKL2Q92772 493 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 PALM3A6NDB9 673 aaPredicted RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 CFAP70Q5T0N1 1121 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 KLHDC4Q8TBB5 520 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 LMOD1P29536 600 aaPredicted RBP7.92□□□□□ -1.14
VPS53-204ENST00000437048 HSPA1LP34931 641 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 WDR44Q5JSH3 913 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 RGS22Q8NE09 1264 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 BCL2L12Q9HB09 334 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 FBLN1P23142 703 aa7.92□□□□□ -1.14
VPS53-204ENST00000437048 DYTNA2CJ06 578 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 CCDC78A2IDD5 438 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 H7C1D1 291 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 KRT16P08779 473 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 GSTA2P09210 222 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 BPIFB4P59827 614 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 ABTB2Q8N961 1025 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 PANK2Q9BZ23 570 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 SEMA3EO15041 775 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 EIF2S1P05198 315 aaKnown RBP7.91□□□□□ -1.14
VPS53-204ENST00000437048 FAM210AQ96ND0 272 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 AMFRQ9UKV5 643 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 TBC1D8BQ0IIM8 1120 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 SYTL4Q96C24 671 aaPredicted RBP7.91□□□□□ -1.14
VPS53-204ENST00000437048 SPDYE3A6NKU9 549 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 OPHN1O60890 802 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 P4HA1P13674 534 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 ADCY2Q08462 1091 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 ADRM1Q16186 407 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 AOC3Q16853 763 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 C8orf34Q49A92 452 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 SV2BQ7L1I2 683 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 RIPOR2Q9Y4F9 1068 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 MAP3K7O43318 606 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 PAK1Q13153 545 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 DONSONQ9NYP3 566 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 RTEL1Q9NZ71 1219 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 MMEP08473 750 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 PBKQ96KB5 322 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 PLCB3Q01970 1234 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 PPP2R5DQ14738 602 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 GGNBP2Q9H3C7 697 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 TRAPPC10P48553 1259 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 C6orf118Q5T5N4 469 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 EXOC6BQ9Y2D4 811 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 LAMC3Q9Y6N6 1575 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 SATB1Q01826 763 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 PEX26Q7Z412 305 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 MAD1L1Q9Y6D9 718 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 ABCA5Q8WWZ7 1642 aa7.91□□□□□ -1.14
VPS53-204ENST00000437048 CRCPO75575 148 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms