RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 KCNH3Q9ULD8 1083 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 CD2APQ9Y5K6 639 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 ZNF532Q9HCE3 1301 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 FYB2Q5VWT5 728 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 NDUFB9Q9Y6M9 179 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 EYA2O00167 538 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 TNNI1P19237 187 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 TNFAIP3P21580 790 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 TTC38Q5R3I4 469 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 MYL10Q9BUA6 226 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 V9GY48 417 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 FRMPD2Q68DX3 1309 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 CNGA1P29973 690 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 FAM102BQ5T8I3 360 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 CYP26C1Q6V0L0 522 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 TBC1D22AQ8WUA7 517 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 TESPA1A2RU30 521 aaPredicted RBP13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 BCRP11274 1271 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 ERCC6LQ2NKX8 1250 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 TMEM87BQ96K49 555 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 USTQ9Y2C2 406 aa13.39□□□□□ -0.27
CCDC88A-207ENST00000436346 hCG_1642624A0A1W2PR95 340 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 NR1I2O75469 434 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 PAK1Q13153 545 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 TLDC2A0PJX2 215 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 ABL1P00519 1130 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 CPA1P15085 419 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 ATL3Q6DD88 541 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 BCS1LQ9Y276 419 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 DCPSQ96C86 337 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 TIMM10P62072 90 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 TUBB4BP68371 445 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 ARHGAP27Q6ZUM4 889 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 CSGALNACT2Q8N6G5 542 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 GOLGA6CA6NDK9 693 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 GOLGA6BA6NDN3 693 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 I3L4J1 428 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 GOLGA6DP0CG33 693 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 CCDC110Q8TBZ0 833 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 GOLGA6AQ9NYA3 693 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 UGGT1Q9NYU2 1555 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 PRPF31Q8WWY3 499 aaKnown RBP13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 SATB1Q01826 763 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 TRIM14Q14142 442 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 KRT81Q14533 505 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 BSPRYQ5W0U4 402 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 ANO1Q5XXA6 986 aa13.38□□□□□ -0.27
CCDC88A-207ENST00000436346 FAM76AQ8TAV0 307 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 LPIN2Q92539 896 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 SEPT10Q9P0V9 454 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 ADCY10Q96PN6 1610 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 STMN2Q93045 179 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 DDX21Q9NR30 783 aaKnown RBP eCLIP13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 MYOM2P54296 1465 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 YARSP54577 528 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 SARNPP82979 210 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 NOLC1Q14978 699 aaKnown RBP eCLIP13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 SNX29Q8TEQ0 813 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 ACTN4O43707 911 aaKnown RBP13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 CAPN2P17655 700 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 OTUD6AQ7L8S5 288 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 NLRX1Q86UT6 975 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 ARAP3Q8WWN8 1544 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 SCNN1DP51172 638 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 ANKFY1Q9P2R3 1169 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 STAM2O75886 525 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 TAOK1Q7L7X3 1001 aa13.37□□□□□ -0.27
CCDC88A-207ENST00000436346 KDM3AQ9Y4C1 1321 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 TBC1D8BQ0IIM8 1120 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 STIM2Q9P246 746 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 EXOC3O60645 756 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 INTS8Q75QN2 995 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 RPUSD2Q8IZ73 545 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 NELFBQ8WX92 580 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 VPS16Q9H269 839 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 CEP85LQ5SZL2 805 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 BEND3Q5T5X7 828 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 KRT25Q7Z3Z0 450 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 DCTPP1Q9H773 170 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 SLAIN2Q9P270 581 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 SND1Q7KZF4 910 aaKnown RBP eCLIP13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 MYL5Q02045 173 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 DCAF15Q66K64 600 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 SESTD1Q86VW0 696 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 ORAI2Q96SN7 254 aa13.36□□□□□ -0.27
CCDC88A-207ENST00000436346 YWHAEP62258 255 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 FAM227BQ96M60 508 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 USP40Q9NVE5 1235 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 ATP10DQ9P241 1426 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 CSPG5O95196 566 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 ARID4AP29374 1257 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 HERC4Q5GLZ8 1057 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 SULF1Q8IWU6 871 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 LLPHQ9BRT6 129 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 AS3MTQ9HBK9 375 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 FER1L4A9Z1Z3 1794 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 AOX1Q06278 1338 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 FLOT1O75955 427 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 PPP2R3AQ06190 1150 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 IFRD2Q12894 506 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms