RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 C19orf81C9J6K1 198 aa22.22■■□□□ 1.15
SHH-203ENST00000435425 FGAP02671 866 aa22.22■■□□□ 1.15
SHH-203ENST00000435425 SLC3A2P08195 630 aaKnown RBP22.22■■□□□ 1.15
SHH-203ENST00000435425 CYP2C8P10632 490 aa22.22■■□□□ 1.15
SHH-203ENST00000435425 SH3D19Q5HYK7 790 aa22.22■■□□□ 1.15
SHH-203ENST00000435425 PROCA1Q8NCQ7 364 aaPredicted RBP22.22■■□□□ 1.15
SHH-203ENST00000435425 RASA1P20936 1047 aa22.21■■□□□ 1.15
SHH-203ENST00000435425 ATP2B2Q01814 1243 aa22.21■■□□□ 1.15
SHH-203ENST00000435425 ALX1Q15699 326 aa22.21■■□□□ 1.15
SHH-203ENST00000435425 USP17L2Q6R6M4 530 aa22.21■■□□□ 1.15
SHH-203ENST00000435425 ZNF444Q8N0Y2 327 aaPredicted RBP22.21■■□□□ 1.15
SHH-203ENST00000435425 CPA4Q9UI42 421 aa22.21■■□□□ 1.15
SHH-203ENST00000435425 TLR2O60603 784 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 ECM2O94769 699 aaPredicted RBP22.2■■□□□ 1.14
SHH-203ENST00000435425 CHMLP26374 656 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 PDE4BQ07343 736 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 ERICH6BQ5W0A0 696 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 TNS4Q8IZW8 715 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 PARK7Q99497 189 aaKnown RBP22.2■■□□□ 1.14
SHH-203ENST00000435425 IL25Q9H293 177 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 ZNF287Q9HBT7 754 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 INCENPQ9NQS7 918 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 EMILIN3Q9NT22 766 aa22.2■■□□□ 1.14
SHH-203ENST00000435425 HAND2P61296 217 aa22.19■■□□□ 1.14
SHH-203ENST00000435425 SP3Q02447 781 aa22.19■■□□□ 1.14
SHH-203ENST00000435425 ICA1Q05084 483 aa22.19■■□□□ 1.14
SHH-203ENST00000435425 NOM1Q5C9Z4 860 aaKnown RBP22.19■■□□□ 1.14
SHH-203ENST00000435425 RUFY2Q8WXA3 655 aa22.19■■□□□ 1.14
SHH-203ENST00000435425 A0A1W2PRG0 241 aa22.18■■□□□ 1.14
SHH-203ENST00000435425 OSBPP22059 807 aa22.18■■□□□ 1.14
SHH-203ENST00000435425 PABPC4Q13310 644 aaKnown RBP eCLIP22.18■■□□□ 1.14
SHH-203ENST00000435425 CD99L2Q8TCZ2 262 aa22.18■■□□□ 1.14
SHH-203ENST00000435425 ARHGEF10LQ9HCE6 1279 aa22.18■■□□□ 1.14
SHH-203ENST00000435425 SLC45A1Q9Y2W3 748 aa22.18■■□□□ 1.14
SHH-203ENST00000435425 USP14P54578 494 aa22.17■■□□□ 1.14
SHH-203ENST00000435425 FAM47AQ5JRC9 791 aa22.17■■□□□ 1.14
SHH-203ENST00000435425 SMCR8Q8TEV9 937 aaPredicted RBP22.17■■□□□ 1.14
SHH-203ENST00000435425 KIAA1683Q9H0B3 1180 aa22.17■■□□□ 1.14
SHH-203ENST00000435425 TOMM22Q9NS69 142 aa22.17■■□□□ 1.14
SHH-203ENST00000435425 PNMA3Q9UL41 463 aa22.17■■□□□ 1.14
SHH-203ENST00000435425 GREB1LQ9C091 1923 aaPredicted RBP22.16■■□□□ 1.14
SHH-203ENST00000435425 EEF2P13639 858 aaKnown RBP22.16■■□□□ 1.14
SHH-203ENST00000435425 C17orf99Q6UX52 265 aa22.16■■□□□ 1.14
SHH-203ENST00000435425 SIAH1Q8IUQ4 282 aa22.16■■□□□ 1.14
SHH-203ENST00000435425 ERO1AQ96HE7 468 aa22.16■■□□□ 1.14
SHH-203ENST00000435425 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.16■■□□□ 1.14
SHH-203ENST00000435425 ASCC2Q9H1I8 757 aaPredicted RBP22.16■■□□□ 1.14
SHH-203ENST00000435425 KANSL2Q9H9L4 492 aa22.16■■□□□ 1.14
SHH-203ENST00000435425 ANAPC4Q9UJX5 808 aa22.16■■□□□ 1.14
SHH-203ENST00000435425 TACC3Q9Y6A5 838 aa22.16■■□□□ 1.14
SHH-203ENST00000435425 ADGRA2Q96PE1 1338 aa22.15■■□□□ 1.14
SHH-203ENST00000435425 RAD21O60216 631 aa22.15■■□□□ 1.14
SHH-203ENST00000435425 TSPY3P0CV98 308 aa22.15■■□□□ 1.14
SHH-203ENST00000435425 TSPY8P0CW00 308 aa22.15■■□□□ 1.14
SHH-203ENST00000435425 IRX3P78415 501 aaPredicted RBP22.15■■□□□ 1.14
SHH-203ENST00000435425 TFAP4Q01664 338 aa22.15■■□□□ 1.14
SHH-203ENST00000435425 RRP12Q5JTH9 1297 aaKnown RBP22.15■■□□□ 1.14
SHH-203ENST00000435425 CTU1Q7Z7A3 348 aaKnown RBP22.15■■□□□ 1.14
SHH-203ENST00000435425 MYH4Q9Y623 1939 aa22.15■■□□□ 1.14
SHH-203ENST00000435425 ZSWIM8A7E2V4 1837 aa22.15■■□□□ 1.14
SHH-203ENST00000435425 ZMYM6O95789 1325 aa22.14■■□□□ 1.14
SHH-203ENST00000435425 RAD50Q92878 1312 aa22.14■■□□□ 1.14
SHH-203ENST00000435425 C12orf42Q96LP6 360 aa22.14■■□□□ 1.13
SHH-203ENST00000435425 DSCC1Q9BVC3 393 aa22.14■■□□□ 1.13
SHH-203ENST00000435425 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.14■■□□□ 1.13
SHH-203ENST00000435425 TSPY2A6NKD2 308 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 ZNF213O14771 459 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 RANBP6O60518 1105 aaKnown RBP22.13■■□□□ 1.13
SHH-203ENST00000435425 VCAM1P19320 739 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 BMP2KLQ5H9B9 411 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 P2RX7Q99572 595 aaKnown RBP22.13■■□□□ 1.13
SHH-203ENST00000435425 MCOLN1Q9GZU1 580 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 SH2D4AQ9H788 454 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 TMX2Q9Y320 296 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 TRIM17Q9Y577 477 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 LAMA4Q16363 1823 aa22.13■■□□□ 1.13
SHH-203ENST00000435425 USP17L15C9J2P7 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L13C9JLJ4 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L11C9JVI0 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L18D6R9N7 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L22D6RA61 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L17D6RBQ6 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L19D6RCP7 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L20D6RJB6 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 HOXA7P31268 230 aaPredicted RBP22.12■■□□□ 1.13
SHH-203ENST00000435425 USP17L24Q0WX57 530 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 KIF22Q14807 665 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 KIAA1755Q5JYT7 1200 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 SPICE1Q8N0Z3 855 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 ANKRD13CQ8N6S4 541 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 NEDD1Q8NHV4 660 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 ARHGAP39Q9C0H5 1083 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 RPAP3Q9H6T3 665 aaPredicted RBP22.12■■□□□ 1.13
SHH-203ENST00000435425 CLIP2Q9UDT6 1046 aa22.12■■□□□ 1.13
SHH-203ENST00000435425 SGSM2O43147 1006 aa22.11■■□□□ 1.13
SHH-203ENST00000435425 BCRP11274 1271 aa22.11■■□□□ 1.13
SHH-203ENST00000435425 CAP1Q01518 475 aa22.11■■□□□ 1.13
SHH-203ENST00000435425 PTH1RQ03431 593 aa22.11■■□□□ 1.13
SHH-203ENST00000435425 MFSD6Q6ZSS7 791 aa22.11■■□□□ 1.13
SHH-203ENST00000435425 TBC1D10CQ8IV04 446 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms