RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 OXCT1P55809 520 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 NLRC3Q7RTR2 1065 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 CDH24Q86UP0 819 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 VPS37DQ86XT2 251 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 PHACTR4Q8IZ21 702 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 SLC43A3Q8NBI5 491 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 ANTXR1Q9H6X2 564 aa9.18□□□□□ -0.94
CCDC88A-206ENST00000430086 CNTNAP4Q9C0A0 1308 aa9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 KIAA1324LA8MWY0 1029 aaPredicted RBP9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 MED26O95402 600 aa9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 NME1P15531 152 aaKnown RBP9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 RAG1P15918 1043 aa9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 CCNFP41002 786 aa9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 ZC3H6P61129 1189 aaKnown RBP9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 SFRP5Q5T4F7 317 aa9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 ZC3H7BQ9UGR2 993 aaKnown RBP9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 STRIP2Q9ULQ0 834 aa9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 U3KQE9 123 aa9.17□□□□□ -0.94
CCDC88A-206ENST00000430086 TNFRSF10CO14798 259 aa9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 ZNF865P0CJ78 1059 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 LRP8Q14114 963 aa9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 INTS3Q68E01 1043 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 DTX1Q86Y01 620 aa9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 TAB3Q8N5C8 712 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 FAM181AQ8N9Y4 354 aa9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 BAHD1Q8TBE0 780 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 KIF2CQ99661 725 aa9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 SRRTQ9BXP5 876 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-206ENST00000430086 COL17A1Q9UMD9 1497 aaPredicted RBP9.15□□□□□ -0.94
CCDC88A-206ENST00000430086 CEACAM5P06731 702 aa9.15□□□□□ -0.94
CCDC88A-206ENST00000430086 SPINK2P20155 84 aa9.15□□□□□ -0.94
CCDC88A-206ENST00000430086 SSTR4P31391 388 aa9.15□□□□□ -0.94
CCDC88A-206ENST00000430086 ARHGAP27Q6ZUM4 889 aa9.15□□□□□ -0.94
CCDC88A-206ENST00000430086 NETO1Q8TDF5 533 aa9.15□□□□□ -0.94
CCDC88A-206ENST00000430086 TM9SF2Q99805 663 aa9.15□□□□□ -0.94
CCDC88A-206ENST00000430086 GNAT3A8MTJ3 354 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 UBOX5O94941 541 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 GBP1P32455 592 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 KIR3DL1P43629 444 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 GIPRP48546 466 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 EIF6P56537 245 aaKnown RBP9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 FBXW10Q5XX13 1052 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 CCDC81Q6ZN84 652 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 LSRQ86X29 649 aaPredicted RBP9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 OR6P1Q8NGX9 317 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 C8orf37Q96NL8 207 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 CRBNQ96SW2 442 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 GMLQ99445 158 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 TNKS2Q9H2K2 1166 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 PLAGL2Q9UPG8 496 aa9.14□□□□□ -0.95
CCDC88A-206ENST00000430086 PRNPP04156 253 aa9.13□□□□□ -0.95
CCDC88A-206ENST00000430086 IFI16Q16666 785 aaKnown RBP9.13□□□□□ -0.95
CCDC88A-206ENST00000430086 PLD6Q8N2A8 252 aaKnown RBP9.13□□□□□ -0.95
CCDC88A-206ENST00000430086 RNF141Q8WVD5 230 aa9.13□□□□□ -0.95
CCDC88A-206ENST00000430086 SHDQ96IW2 340 aa9.13□□□□□ -0.95
CCDC88A-206ENST00000430086 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.13□□□□□ -0.95
CCDC88A-206ENST00000430086 BSDC1Q9NW68 430 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-206ENST00000430086 PRR33A8MZF0 331 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 HYAL3O43820 417 aaPredicted RBP9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 ARID5AQ03989 594 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 NKPD1Q17RQ9 610 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 ARTNQ5T4W7 220 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 SPACA3Q8IXA5 215 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 MFSD4AQ8N468 514 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 VWCEQ96DN2 955 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 FBXL18Q96ME1 805 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 KREMEN1Q96MU8 473 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 SLC9A7Q96T83 725 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 SNX11Q9Y5W9 270 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 CAPN6Q9Y6Q1 641 aa9.12□□□□□ -0.95
CCDC88A-206ENST00000430086 TMEM265A0A087WTH1 108 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 ACRP10323 421 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 ITIH2P19823 946 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 GUCY2CP25092 1073 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 POLR2BP30876 1174 aaKnown RBP9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 NAALADL2Q58DX5 795 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 CPLX3Q8WVH0 158 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 MISP3Q96FF7 219 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 ASPNQ9BXN1 380 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 PCMTD2Q9NV79 361 aa9.11□□□□□ -0.95
CCDC88A-206ENST00000430086 CBX7O95931 251 aa9.1□□□□□ -0.95
CCDC88A-206ENST00000430086 FGRP09769 529 aa9.1□□□□□ -0.95
CCDC88A-206ENST00000430086 CLCN7P51798 805 aa9.1□□□□□ -0.95
CCDC88A-206ENST00000430086 C19orf47Q8N9M1 422 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-206ENST00000430086 PIWIL2Q8TC59 973 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-206ENST00000430086 SCO2A0A1W2PP80 73 aa9.09□□□□□ -0.95
CCDC88A-206ENST00000430086 RUFY4Q6ZNE9 571 aa9.09□□□□□ -0.95
CCDC88A-206ENST00000430086 STK11IPQ8N1F8 1099 aa9.09□□□□□ -0.95
CCDC88A-206ENST00000430086 Q96M66 194 aa9.09□□□□□ -0.95
CCDC88A-206ENST00000430086 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.09□□□□□ -0.95
CCDC88A-206ENST00000430086 VAV3Q9UKW4 847 aa9.09□□□□□ -0.95
CCDC88A-206ENST00000430086 FAM155AB1AL88 458 aaPredicted RBP9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 CHMP4BP1P59074 171 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 RNF4P78317 190 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 PRKCQQ04759 706 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 VSIG10LQ86VR7 867 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 MCF2L2Q86YR7 1114 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 TMEM192Q8IY95 271 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 DHRS1Q96LJ7 313 aa9.08□□□□□ -0.96
CCDC88A-206ENST00000430086 ZFP64Q9NPA5 681 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms