RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 ERVK-9P63128 1117 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 ERVK-24P63145 666 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 TRIM32Q13049 653 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 ACER1Q8TDN7 264 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 C12orf42Q96LP6 360 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 HTATIP2Q9BUP3 242 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 RBPJLQ9UBG7 517 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 A0A0G2JMZ2 1700 aa20.66■□□□□ 0.9
TRIM39-209ENST00000428728 MPHOSPH10O00566 681 aaKnown RBP20.65■□□□□ 0.9
TRIM39-209ENST00000428728 SMARCA5O60264 1052 aaPredicted RBP20.65■□□□□ 0.9
TRIM39-209ENST00000428728 MBD4O95243 580 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 CYP2D6P10635 497 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 ATP5JP18859 108 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 ADD2P35612 726 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 USP14P54578 494 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 GABPAQ06546 454 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 CCAR1Q8IX12 1150 aaKnown RBP20.65■□□□□ 0.9
TRIM39-209ENST00000428728 GTF3C2Q8WUA4 911 aaPredicted RBP20.65■□□□□ 0.9
TRIM39-209ENST00000428728 LRRCC1Q9C099 1032 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 PORCNQ9H237 461 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 DCP1AQ9NPI6 582 aaPredicted RBP20.65■□□□□ 0.9
TRIM39-209ENST00000428728 COLQQ9Y215 455 aaPredicted RBP20.65■□□□□ 0.9
TRIM39-209ENST00000428728 RLFQ13129 1914 aa20.65■□□□□ 0.9
TRIM39-209ENST00000428728 VCAM1P19320 739 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 PDE3AQ14432 1141 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 SEPT2Q15019 361 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 Q3C1V9 767 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 SLC44A5Q8NCS7 719 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 SOCS4Q8WXH5 440 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 TRIB2Q92519 343 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 HAUS7Q99871 368 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 NUDT12Q9BQG2 462 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.64■□□□□ 0.89
TRIM39-209ENST00000428728 KIAA1683Q9H0B3 1180 aa20.64■□□□□ 0.89
TRIM39-209ENST00000428728 CWC22Q9HCG8 908 aaKnown RBP20.64■□□□□ 0.89
TRIM39-209ENST00000428728 COL11A1P12107 1806 aaPredicted RBP20.64■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L15C9J2P7 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L13C9JLJ4 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L11C9JVI0 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L18D6R9N7 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L22D6RA61 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L17D6RBQ6 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L19D6RCP7 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L20D6RJB6 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 PRKAB2O43741 272 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 CHGBP05060 677 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 MAPK4P31152 587 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 GUCY1A2P33402 732 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 USP17L24Q0WX57 530 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 POTEEQ6S8J3 1075 aa20.63■□□□□ 0.89
TRIM39-209ENST00000428728 GPR142Q7Z601 462 aa20.62■□□□□ 0.89
TRIM39-209ENST00000428728 HMX1Q9NP08 348 aaPredicted RBP20.62■□□□□ 0.89
TRIM39-209ENST00000428728 RPTORQ8N122 1335 aa20.61■□□□□ 0.89
TRIM39-209ENST00000428728 WDR78Q5VTH9 848 aa20.61■□□□□ 0.89
TRIM39-209ENST00000428728 CHRDL2Q6WN34 429 aa20.61■□□□□ 0.89
TRIM39-209ENST00000428728 CATSPERGQ6ZRH7 1159 aa20.61■□□□□ 0.89
TRIM39-209ENST00000428728 DYNLL2Q96FJ2 89 aa20.61■□□□□ 0.89
TRIM39-209ENST00000428728 CRISPLD2Q9H0B8 497 aa20.61■□□□□ 0.89
TRIM39-209ENST00000428728 RPAP3Q9H6T3 665 aaPredicted RBP20.61■□□□□ 0.89
TRIM39-209ENST00000428728 CNMDO75829 334 aa20.6■□□□□ 0.89
TRIM39-209ENST00000428728 PRKAR2AP13861 404 aaKnown RBP20.6■□□□□ 0.89
TRIM39-209ENST00000428728 ZKSCAN1P17029 563 aaPredicted RBP20.6■□□□□ 0.89
TRIM39-209ENST00000428728 PLEKHH3Q7Z736 793 aa20.6■□□□□ 0.89
TRIM39-209ENST00000428728 CLEC10AQ8IUN9 316 aa20.6■□□□□ 0.89
TRIM39-209ENST00000428728 DIS3LQ8TF46 1054 aaKnown RBP20.6■□□□□ 0.89
TRIM39-209ENST00000428728 RABGAP1Q9Y3P9 1069 aa20.6■□□□□ 0.89
TRIM39-209ENST00000428728 TRIOBPQ9H2D6 2365 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 CYP2D7A0A087X1C5 515 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 SMIM22K7EJ46 135 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 PAWRQ96IZ0 340 aaKnown RBP20.59■□□□□ 0.89
TRIM39-209ENST00000428728 APBA2Q99767 749 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 ATP8A2Q9NTI2 1148 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 SWAP70Q9UH65 585 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 ZNF236Q9UL36 1845 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 GREB1LQ9C091 1923 aaPredicted RBP20.59■□□□□ 0.89
TRIM39-209ENST00000428728 MYH4Q9Y623 1939 aa20.59■□□□□ 0.89
TRIM39-209ENST00000428728 A0A1W2PRG0 241 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 SPDYE16A6NNV3 312 aaPredicted RBP20.58■□□□□ 0.89
TRIM39-209ENST00000428728 XRCC5P13010 732 aaKnown RBP20.58■□□□□ 0.89
TRIM39-209ENST00000428728 RGS2P41220 211 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 FXR1P51114 621 aaKnown RBP eCLIP20.58■□□□□ 0.89
TRIM39-209ENST00000428728 CCNA1P78396 465 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 CCL14Q16627 93 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 MORN1Q5T089 497 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 TMEM179Q6ZVK1 233 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 AMOTL1Q8IY63 956 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 TANGO6Q9C0B7 1094 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 NR2E3Q9Y5X4 410 aa20.58■□□□□ 0.89
TRIM39-209ENST00000428728 ZNFX1Q9P2E3 1918 aaKnown RBP20.58■□□□□ 0.88
TRIM39-209ENST00000428728 AKR1B1P15121 316 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 CAPN2P17655 700 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 UBE3CQ15386 1083 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 TSHZ3Q63HK5 1081 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 USP6NLQ92738 828 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 DDRGK1Q96HY6 314 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 BTBD7Q9P203 1132 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 SLC4A4Q9Y6R1 1079 aa20.57■□□□□ 0.88
TRIM39-209ENST00000428728 USP17L12C9JPN9 530 aa20.56■□□□□ 0.88
TRIM39-209ENST00000428728 USP17L21D6R901 530 aa20.56■□□□□ 0.88
TRIM39-209ENST00000428728 EVI5O60447 810 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms