RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ADKP55263 362 aaKnown RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 MAPK8IP2Q13387 824 aaPredicted RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 KCTD19Q17RG1 926 aaPredicted RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 CATIPQ7Z7H3 387 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 LRRC47Q8N1G4 583 aaKnown RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 MYRIPQ8NFW9 859 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 KRT23Q9C075 422 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 SAMSN1Q9NSI8 373 aaKnown RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 LRP5O75197 1615 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 BAZ2AQ9UIF9 1905 aaKnown RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 G3V3G9 751 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 MPHOSPH10O00566 681 aaKnown RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 RPS6KA4O75676 772 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 SERPINB2P05120 415 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 TNNT1P13805 278 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 TERF1P54274 439 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 SLC39A14Q15043 492 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 DCAF8Q5TAQ9 597 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 PRR5LQ6MZQ0 368 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 TYW1BQ6NUM6 668 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 ANO10Q9NW15 660 aa9.6□□□□□ -0.87
CD44-208ENST00000428726 PPP1R1BQ9UD71 204 aaPredicted RBP9.6□□□□□ -0.87
CD44-208ENST00000428726 CAVIN2O95810 425 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 TM4SF1P30408 202 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 SLC16A2P36021 539 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 FMR1Q06787 632 aaKnown RBP eCLIP9.59□□□□□ -0.87
CD44-208ENST00000428726 MFSD14BQ5SR56 506 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 SLC30A10Q6XR72 485 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 KIAA1524Q8TCG1 905 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 KCNG4Q8TDN1 519 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 HPS3Q969F9 1004 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 TMEM87BQ96K49 555 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 DNAH12Q6ZR08 3092 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 ARAP2Q8WZ64 1704 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 A0A0U1RQJ8 604 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 CTAGE5O15320 804 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 MMP1P03956 469 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 TPM3P06753 285 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 TSPY3P0CV98 308 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 TSPY8P0CW00 308 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 PTPAQ15257 358 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 RGS22Q8NE09 1264 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 ATRIPQ8WXE1 791 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 GJD4Q96KN9 370 aaPredicted RBP9.59□□□□□ -0.87
CD44-208ENST00000428726 EPC1Q9H2F5 836 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 ZSWIM4Q9H7M6 989 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 GPCPD1Q9NPB8 672 aa9.59□□□□□ -0.87
CD44-208ENST00000428726 DDX60Q8IY21 1712 aaKnown RBP9.59□□□□□ -0.87
CD44-208ENST00000428726 KIAA0825Q8IV33 1275 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 MAP3K14Q99558 947 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 DESI2Q9BSY9 194 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 POLLQ9UGP5 575 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 CDKL5O76039 1030 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 FMNL1O95466 1100 aaPredicted RBP9.58□□□□□ -0.88
CD44-208ENST00000428726 CCT6AP40227 531 aaKnown RBP9.58□□□□□ -0.88
CD44-208ENST00000428726 BTDP43251 543 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 PTGDRQ13258 359 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 UBE4AQ14139 1066 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 ALX1Q15699 326 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 PKN1Q16512 942 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 INF2Q27J81 1249 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 PDCL2Q8N4E4 241 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 LRRN4CLQ8ND94 238 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 CTCFLQ8NI51 663 aaPredicted RBP9.58□□□□□ -0.88
CD44-208ENST00000428726 STAG1Q8WVM7 1258 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 IL17RBQ9NRM6 502 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 GOLGA6L6A8MZA4 724 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 RAD51AP2Q09MP3 1159 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 JAKMIP3Q5VZ66 844 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 ZSCAN29Q8IWY8 852 aaPredicted RBP9.58□□□□□ -0.88
CD44-208ENST00000428726 SYMPKQ92797 1274 aaKnown RBP9.58□□□□□ -0.88
CD44-208ENST00000428726 HINFPQ9BQA5 517 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 CRNKL1Q9BZJ0 848 aaKnown RBP9.58□□□□□ -0.88
CD44-208ENST00000428726 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.58□□□□□ -0.88
CD44-208ENST00000428726 MYH2Q9UKX2 1941 aa9.58□□□□□ -0.88
CD44-208ENST00000428726 TFRCP02786 760 aaKnown RBP9.57□□□□□ -0.88
CD44-208ENST00000428726 IFNAR1P17181 557 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 UBASH3AP57075 661 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 KARSQ15046 597 aaKnown RBP9.57□□□□□ -0.88
CD44-208ENST00000428726 SEC23AQ15436 765 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 BRAPQ7Z569 592 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 ZNF444Q8N0Y2 327 aaPredicted RBP9.57□□□□□ -0.88
CD44-208ENST00000428726 KRI1Q8N9T8 703 aaKnown RBP9.57□□□□□ -0.88
CD44-208ENST00000428726 TDRD7Q8NHU6 1098 aaKnown RBP9.57□□□□□ -0.88
CD44-208ENST00000428726 KAT14Q9H8E8 782 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 POLR3EQ9NVU0 708 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 FAM205AQ6ZU69 1335 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 RTL9Q8NET4 1388 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 RREB1Q92766 1687 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 CHRNA5P30532 468 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 FANCCQ00597 558 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 DDR1Q08345 913 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 TROAPQ12815 778 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 SF3B3Q15393 1217 aaKnown RBP9.57□□□□□ -0.88
CD44-208ENST00000428726 FBXO33Q7Z6M2 555 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 PLA2G4DQ86XP0 818 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 LRRC8AQ8IWT6 810 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 TEX11Q8IYF3 940 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 PNMA1Q8ND90 353 aa9.57□□□□□ -0.88
CD44-208ENST00000428726 COA7Q96BR5 231 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms