RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 ICA1Q05084 483 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 FASTKD5Q7L8L6 764 aaKnown RBP17.23■□□□□ 0.35
SGCE-204ENST00000428696 TBC1D10CQ8IV04 446 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 JMYQ8N9B5 988 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 CHMP4CQ96CF2 233 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 PTPN18Q99952 460 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 WDR18Q9BV38 432 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 TBC1D2Q9BYX2 928 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 LSG1Q9H089 658 aaKnown RBP17.23■□□□□ 0.35
SGCE-204ENST00000428696 KANSL2Q9H9L4 492 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 ARHGEF10LQ9HCE6 1279 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 RNF186Q9NXI6 227 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 CLIP2Q9UDT6 1046 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 KCNH4Q9UQ05 1017 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 TACC3Q9Y6A5 838 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 ZMYM6O95789 1325 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 SIPA1L1O43166 1804 aa17.23■□□□□ 0.35
SGCE-204ENST00000428696 OTOFQ9HC10 1997 aa17.22■□□□□ 0.35
SGCE-204ENST00000428696 ROBO3Q96MS0 1386 aa17.22■□□□□ 0.35
SGCE-204ENST00000428696 IGF2BP3O00425 579 aaKnown RBP eCLIP17.22■□□□□ 0.35
SGCE-204ENST00000428696 TBC1D8O95759 1140 aa17.22■□□□□ 0.35
SGCE-204ENST00000428696 HSPA1AP0DMV8 641 aaKnown RBP17.22■□□□□ 0.35
SGCE-204ENST00000428696 HSPA1BP0DMV9 641 aaKnown RBP17.22■□□□□ 0.35
SGCE-204ENST00000428696 EEF2P13639 858 aaKnown RBP17.22■□□□□ 0.35
SGCE-204ENST00000428696 BACE1P56817 501 aa17.22■□□□□ 0.35
SGCE-204ENST00000428696 TRDNQ13061 729 aa17.22■□□□□ 0.35
SGCE-204ENST00000428696 NBPF3Q9H094 633 aa17.22■□□□□ 0.35
SGCE-204ENST00000428696 WBP1LQ9NX94 342 aa17.22■□□□□ 0.35
SGCE-204ENST00000428696 BTBD19C9JJ37 291 aa17.21■□□□□ 0.35
SGCE-204ENST00000428696 STAG1Q8WVM7 1258 aa17.21■□□□□ 0.35
SGCE-204ENST00000428696 ESR2Q92731 530 aa17.21■□□□□ 0.35
SGCE-204ENST00000428696 ISY1Q9ULR0 285 aaKnown RBP17.21■□□□□ 0.35
SGCE-204ENST00000428696 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.21■□□□□ 0.35
SGCE-204ENST00000428696 DDX60LQ5H9U9 1706 aaKnown RBP17.21■□□□□ 0.35
SGCE-204ENST00000428696 A0A0G2JLL6 359 aaPredicted RBP17.21■□□□□ 0.34
SGCE-204ENST00000428696 B4E1Z4 1266 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 C19orf81C9J6K1 198 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 PDHXO00330 501 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 ORC4O43929 436 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 NMT2O60551 498 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 REC8O95072 547 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 CYP21A2P08686 494 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 USP17L2Q6R6M4 530 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 SAMD1Q6SPF0 538 aaPredicted RBP17.21■□□□□ 0.34
SGCE-204ENST00000428696 PRRT2Q7Z6L0 340 aaPredicted RBP17.21■□□□□ 0.34
SGCE-204ENST00000428696 FAM43AQ8N2R8 423 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 NEDD1Q8NHV4 660 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 CEP95Q96GE4 821 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 ZKSCAN3Q9BRR0 538 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.21■□□□□ 0.34
SGCE-204ENST00000428696 STX8Q9UNK0 236 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 MTMR7Q9Y216 660 aa17.21■□□□□ 0.34
SGCE-204ENST00000428696 A0A1W2PRG0 241 aa17.2■□□□□ 0.34
SGCE-204ENST00000428696 TESPA1A2RU30 521 aaPredicted RBP17.2■□□□□ 0.34
SGCE-204ENST00000428696 KDM4AO75164 1064 aa17.2■□□□□ 0.34
SGCE-204ENST00000428696 ALDH1A1P00352 501 aa17.2■□□□□ 0.34
SGCE-204ENST00000428696 TAF1CQ15572 869 aaPredicted RBP17.2■□□□□ 0.34
SGCE-204ENST00000428696 RALYLQ86SE5 291 aaKnown RBP17.2■□□□□ 0.34
SGCE-204ENST00000428696 SPICE1Q8N0Z3 855 aa17.2■□□□□ 0.34
SGCE-204ENST00000428696 SH2D4AQ9H788 454 aa17.2■□□□□ 0.34
SGCE-204ENST00000428696 NEDD4P46934 1319 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 SLC27A2O14975 620 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 PCP11498 1178 aaKnown RBP17.19■□□□□ 0.34
SGCE-204ENST00000428696 USP14P54578 494 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 TREML2Q5T2D2 321 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 RNF20Q5VTR2 975 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 CREB3L3Q68CJ9 461 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 SIAH1Q8IUQ4 282 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 KRT23Q9C075 422 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 CNNM2Q9H8M5 875 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 EMILIN3Q9NT22 766 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 MTMR4Q9NYA4 1195 aa17.19■□□□□ 0.34
SGCE-204ENST00000428696 DOCK1Q14185 1865 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 E7EWF7 191 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 FOXN1O15353 648 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 ECM2O94769 699 aaPredicted RBP17.18■□□□□ 0.34
SGCE-204ENST00000428696 TTLL1O95922 423 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 ANKRD23Q86SG2 305 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 LRRC47Q8N1G4 583 aaKnown RBP17.18■□□□□ 0.34
SGCE-204ENST00000428696 KIAA1683Q9H0B3 1180 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 ZFYVE28Q9HCC9 887 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 ZSWIM5Q9P217 1185 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 AGTPBP1Q9UPW5 1226 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 TAF6LQ9Y6J9 622 aa17.18■□□□□ 0.34
SGCE-204ENST00000428696 CA12O43570 354 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 FGRP09769 529 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 CYP2C8P10632 490 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 PABPC4Q13310 644 aaKnown RBP eCLIP17.17■□□□□ 0.34
SGCE-204ENST00000428696 MOGSQ13724 837 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 GPAT2Q6NUI2 795 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 CHST3Q7LGC8 479 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 PROCA1Q8NCQ7 364 aaPredicted RBP17.17■□□□□ 0.34
SGCE-204ENST00000428696 NKX2-3Q8TAU0 364 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 UBAC1Q9BSL1 405 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 GOPCQ9HD26 462 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 TMX2Q9Y320 296 aa17.17■□□□□ 0.34
SGCE-204ENST00000428696 ZKSCAN1P17029 563 aaPredicted RBP17.16■□□□□ 0.34
SGCE-204ENST00000428696 OSBPP22059 807 aa17.16■□□□□ 0.34
SGCE-204ENST00000428696 IRX3P78415 501 aaPredicted RBP17.16■□□□□ 0.34
SGCE-204ENST00000428696 CRHR2Q13324 411 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 276.3 ms