RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RTN1Q16799 776 aa20■□□□□ 0.79
CCDC28B-202ENST00000421922 ABCB5Q2M3G0 1257 aa20■□□□□ 0.79
CCDC28B-202ENST00000421922 METTL16Q86W50 562 aaKnown RBP20■□□□□ 0.79
CCDC28B-202ENST00000421922 CCDC144CPQ8IYA2 1237 aa20■□□□□ 0.79
CCDC28B-202ENST00000421922 FAM184AQ8NB25 1140 aa20■□□□□ 0.79
CCDC28B-202ENST00000421922 DCPSQ96C86 337 aaKnown RBP20■□□□□ 0.79
CCDC28B-202ENST00000421922 MYL10Q9BUA6 226 aa20■□□□□ 0.79
CCDC28B-202ENST00000421922 DNAJC18Q9H819 358 aa20■□□□□ 0.79
CCDC28B-202ENST00000421922 NCOA5Q9HCD5 579 aaKnown RBP20■□□□□ 0.79
CCDC28B-202ENST00000421922 PPP2R3BQ9Y5P8 575 aa20■□□□□ 0.79
CCDC28B-202ENST00000421922 MYH4Q9Y623 1939 aa19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 RXRAP19793 462 aa19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 GJB2P29033 226 aa19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 EPHX2P34913 555 aa19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 HMGN5P82970 282 aaKnown RBP19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 TATDN1Q6P1N9 297 aa19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 USP50Q70EL3 339 aaPredicted RBP19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 CTCFLQ8NI51 663 aaPredicted RBP19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 CEP95Q96GE4 821 aa19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 IL17RBQ9NRM6 502 aa19.99■□□□□ 0.79
CCDC28B-202ENST00000421922 GREB1LQ9C091 1923 aaPredicted RBP19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 TBC1D12O60347 775 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 TOP1P11387 765 aaKnown RBP19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 ATP2B2Q01814 1243 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 ST3GAL1Q11201 340 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 PPP2R5BQ15173 497 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 DCAF15Q66K64 600 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 TMEM179Q6ZVK1 233 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 PNMA1Q8ND90 353 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 ANKS1AQ92625 1134 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 RBM28Q9NW13 759 aaKnown RBP19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 SCAF8Q9UPN6 1271 aaKnown RBP19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 HPS5Q9UPZ3 1129 aa19.98■□□□□ 0.79
CCDC28B-202ENST00000421922 WDR90Q96KV7 1748 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 GDF11O95390 407 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 TTLL1O95922 423 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 PDCP20941 246 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 NUCB2P80303 420 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 MIGA2Q7L4E1 593 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 SULF1Q8IWU6 871 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 MTMR4Q9NYA4 1195 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 NID2Q14112 1375 aa19.97■□□□□ 0.79
CCDC28B-202ENST00000421922 PTPDC1A2A3K4 754 aa19.96■□□□□ 0.79
CCDC28B-202ENST00000421922 KIF5BP33176 963 aa19.96■□□□□ 0.79
CCDC28B-202ENST00000421922 HIRAP54198 1017 aaPredicted RBP19.96■□□□□ 0.79
CCDC28B-202ENST00000421922 RCSD1Q6JBY9 416 aa19.96■□□□□ 0.79
CCDC28B-202ENST00000421922 NSUN7Q8NE18 718 aaKnown RBP19.96■□□□□ 0.79
CCDC28B-202ENST00000421922 POLR2AP24928 1970 aaKnown RBP19.96■□□□□ 0.79
CCDC28B-202ENST00000421922 ATAD5Q96QE3 1844 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 SLURP2P0DP57 97 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 RAB3GAP1Q15042 981 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 EAPPQ56P03 285 aaPredicted RBP19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 CDAN1Q8IWY9 1227 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 FANCBQ8NB91 859 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 DDX11Q96FC9 970 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 TMEM47Q9BQJ4 181 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 KANSL2Q9H9L4 492 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 MTMR7Q9Y216 660 aa19.95■□□□□ 0.78
CCDC28B-202ENST00000421922 GH2P01242 217 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 ICA1Q05084 483 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 SUPT20HL1Q3ZLR7 823 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 PNMA8AQ86V59 439 aaPredicted RBP19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 TRIM22Q8IYM9 498 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 DNAJC5GQ8N7S2 189 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 TEPSINQ96N21 525 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 CLIP2Q9UDT6 1046 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 MYH6P13533 1939 aa19.94■□□□□ 0.78
CCDC28B-202ENST00000421922 IGKV6D-41A0A0C4DH26 115 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 JAK2O60674 1132 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 PDIA4P13667 645 aaKnown RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 ADD1P35611 737 aaKnown RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 APLP1P51693 650 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 AKAP17AQ02040 695 aaKnown RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 ZC3H15Q8WU90 426 aaKnown RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 ZNF341Q9BYN7 854 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 CDC27P30260 824 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 DDIT3P35638 169 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 GNAQP50148 359 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 SSRP1Q08945 709 aaKnown RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 TROAPQ12815 778 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 SEPT2Q15019 361 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 NBPF12Q5TAG4 269 aaPredicted RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 SMARCC2Q8TAQ2 1214 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 MAP3K14Q99558 947 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 TAF1DQ9H5J8 278 aaPredicted RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 ORC3Q9UBD5 711 aaPredicted RBP19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 PGAP2Q9UHJ9 254 aa19.93■□□□□ 0.78
CCDC28B-202ENST00000421922 LARP1BQ659C4 914 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-202ENST00000421922 KRT26Q7Z3Y9 468 aa19.92■□□□□ 0.78
CCDC28B-202ENST00000421922 CLEC10AQ8IUN9 316 aa19.92■□□□□ 0.78
CCDC28B-202ENST00000421922 LRRC47Q8N1G4 583 aaKnown RBP19.92■□□□□ 0.78
CCDC28B-202ENST00000421922 ARHGEF10LQ9HCE6 1279 aa19.92■□□□□ 0.78
CCDC28B-202ENST00000421922 NYAP2Q9P242 653 aa19.92■□□□□ 0.78
CCDC28B-202ENST00000421922 ZBTB21Q9ULJ3 1066 aa19.92■□□□□ 0.78
CCDC28B-202ENST00000421922 WDR33Q9C0J8 1336 aaKnown RBP19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 H3BQV1 296 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 RAD21O60216 631 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 CTDNEP1O95476 244 aa19.91■□□□□ 0.78
CCDC28B-202ENST00000421922 ASNSP08243 561 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms