RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 ELP1O95163 1332 aa24.35■■□□□ 1.49
GPC1-202ENST00000420138 KIF28PB7ZC32 967 aa24.35■■□□□ 1.49
GPC1-202ENST00000420138 KIF23Q02241 960 aaPredicted RBP24.35■■□□□ 1.49
GPC1-202ENST00000420138 CAVIN1Q6NZI2 390 aaKnown RBP24.35■■□□□ 1.49
GPC1-202ENST00000420138 SH3BP5LQ7L8J4 393 aa24.35■■□□□ 1.49
GPC1-202ENST00000420138 RNF26Q9BY78 433 aaPredicted RBP24.35■■□□□ 1.49
GPC1-202ENST00000420138 SERPINB13Q9UIV8 391 aa24.35■■□□□ 1.49
GPC1-202ENST00000420138 ZBTB12Q9Y330 459 aaPredicted RBP24.35■■□□□ 1.49
GPC1-202ENST00000420138 UBE2HP62256 183 aa24.34■■□□□ 1.49
GPC1-202ENST00000420138 TDRD3Q9H7E2 651 aaKnown RBP24.34■■□□□ 1.49
GPC1-202ENST00000420138 KAT14Q9H8E8 782 aa24.34■■□□□ 1.49
GPC1-202ENST00000420138 RBM27Q9P2N5 1060 aaKnown RBP24.34■■□□□ 1.49
GPC1-202ENST00000420138 DICER1Q9UPY3 1922 aaKnown RBP24.34■■□□□ 1.49
GPC1-202ENST00000420138 PLIN4Q96Q06 1357 aa24.34■■□□□ 1.49
GPC1-202ENST00000420138 DEXIO95424 95 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 SHMT1P34896 483 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 CXCL9Q07325 125 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 CSPP1Q1MSJ5 1256 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 TRIM22Q8IYM9 498 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 PNMA1Q8ND90 353 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 LEO1Q8WVC0 666 aaPredicted RBP24.33■■□□□ 1.49
GPC1-202ENST00000420138 MAP3K14Q99558 947 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 TMEM47Q9BQJ4 181 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 SCAND2PQ9GZW5 306 aaPredicted RBP24.33■■□□□ 1.49
GPC1-202ENST00000420138 EHD4Q9H223 541 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 TMEM63CQ9P1W3 806 aa24.33■■□□□ 1.49
GPC1-202ENST00000420138 DDTLA6NHG4 134 aaPredicted RBP24.33■■□□□ 1.48
GPC1-202ENST00000420138 SLURP2P0DP57 97 aa24.33■■□□□ 1.48
GPC1-202ENST00000420138 PKN1Q16512 942 aa24.33■■□□□ 1.48
GPC1-202ENST00000420138 SRBD1Q8N5C6 995 aaKnown RBP24.33■■□□□ 1.48
GPC1-202ENST00000420138 DNAJC18Q9H819 358 aa24.33■■□□□ 1.48
GPC1-202ENST00000420138 SWAP70Q9UH65 585 aa24.33■■□□□ 1.48
GPC1-202ENST00000420138 SBF1O95248 1867 aa24.32■■□□□ 1.48
GPC1-202ENST00000420138 MRE11P49959 708 aa24.32■■□□□ 1.48
GPC1-202ENST00000420138 TCP10Q12799 353 aa24.32■■□□□ 1.48
GPC1-202ENST00000420138 ARHGAP27Q6ZUM4 889 aa24.32■■□□□ 1.48
GPC1-202ENST00000420138 CTCFLQ8NI51 663 aaPredicted RBP24.32■■□□□ 1.48
GPC1-202ENST00000420138 WASF1Q92558 559 aa24.32■■□□□ 1.48
GPC1-202ENST00000420138 SHISA4Q96DD7 197 aa24.32■■□□□ 1.48
GPC1-202ENST00000420138 FTOQ9C0B1 505 aaKnown RBP eCLIP24.32■■□□□ 1.48
GPC1-202ENST00000420138 IGKV6D-41A0A0C4DH26 115 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 PRPF3O43395 683 aaKnown RBP24.31■■□□□ 1.48
GPC1-202ENST00000420138 XRCC6P12956 609 aaKnown RBP eCLIP24.31■■□□□ 1.48
GPC1-202ENST00000420138 CEP95Q96GE4 821 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 USP28Q96RU2 1077 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 DHX36Q9H2U1 1008 aaKnown RBP24.31■■□□□ 1.48
GPC1-202ENST00000420138 STX8Q9UNK0 236 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 CNTNAP5Q8WYK1 1306 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 SPDYE2BA6NHP3 402 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 HLA-DOAP06340 250 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 SPDYE6P0CI01 402 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 AKR1B1P15121 316 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 ATL3Q6DD88 541 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 SPATA32Q96LK8 384 aa24.31■■□□□ 1.48
GPC1-202ENST00000420138 PRELPP51888 382 aa24.3■■□□□ 1.48
GPC1-202ENST00000420138 CIAPIN1Q6FI81 312 aa24.3■■□□□ 1.48
GPC1-202ENST00000420138 BRAPQ7Z569 592 aa24.3■■□□□ 1.48
GPC1-202ENST00000420138 AGBL3Q8NEM8 1001 aa24.3■■□□□ 1.48
GPC1-202ENST00000420138 CFAP45Q9UL16 551 aa24.3■■□□□ 1.48
GPC1-202ENST00000420138 GRM4Q14833 912 aa24.29■■□□□ 1.48
GPC1-202ENST00000420138 MAD2L2Q9UI95 211 aa24.29■■□□□ 1.48
GPC1-202ENST00000420138 RCOR1Q9UKL0 485 aa24.29■■□□□ 1.48
GPC1-202ENST00000420138 V9GY48 417 aaPredicted RBP24.29■■□□□ 1.48
GPC1-202ENST00000420138 SIPA1L1O43166 1804 aa24.29■■□□□ 1.48
GPC1-202ENST00000420138 ATRNL1Q5VV63 1379 aa24.29■■□□□ 1.48
GPC1-202ENST00000420138 U2AF2P26368 475 aaKnown RBP eCLIP24.28■■□□□ 1.48
GPC1-202ENST00000420138 ZSCAN23Q3MJ62 389 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 STAG2Q8N3U4 1231 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 ENTPD3O75355 529 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 MYSM1Q5VVJ2 828 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 PGBD1Q96JS3 809 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 GRPEL1Q9HAV7 217 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 MTMR4Q9NYA4 1195 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 PI4KBQ9UBF8 816 aa24.28■■□□□ 1.48
GPC1-202ENST00000420138 hCG_1642624A0A1W2PR95 340 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 MMP1P03956 469 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 KIF5BP33176 963 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 TRIM29Q14134 588 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 TNIP1Q15025 636 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 SLC35G1Q2M3R5 365 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 METTL16Q86W50 562 aaKnown RBP24.27■■□□□ 1.48
GPC1-202ENST00000420138 OGFOD1Q8N543 542 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 ZNF396Q96N95 335 aaPredicted RBP24.27■■□□□ 1.48
GPC1-202ENST00000420138 HDAC9Q9UKV0 1011 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 KCNJ14Q9UNX9 436 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 UTRNP46939 3433 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 SRCAPQ6ZRS2 3230 aa24.27■■□□□ 1.48
GPC1-202ENST00000420138 CEBPZQ03701 1054 aaKnown RBP24.26■■□□□ 1.47
GPC1-202ENST00000420138 GAS2L3Q86XJ1 694 aa24.26■■□□□ 1.47
GPC1-202ENST00000420138 MTMR14Q8NCE2 650 aa24.26■■□□□ 1.47
GPC1-202ENST00000420138 TAOK2Q9UL54 1235 aa24.26■■□□□ 1.47
GPC1-202ENST00000420138 COL2A1P02458 1487 aaPredicted RBP24.26■■□□□ 1.47
GPC1-202ENST00000420138 PALM3A6NDB9 673 aaPredicted RBP24.26■■□□□ 1.47
GPC1-202ENST00000420138 TOP1P11387 765 aaKnown RBP24.26■■□□□ 1.47
GPC1-202ENST00000420138 ZNF445P59923 1031 aa24.26■■□□□ 1.47
GPC1-202ENST00000420138 DLGAP5Q15398 846 aa24.26■■□□□ 1.47
GPC1-202ENST00000420138 RASGRP2Q7LDG7 609 aa24.26■■□□□ 1.47
GPC1-202ENST00000420138 ZBED3Q96IU2 234 aaPredicted RBP24.26■■□□□ 1.47
GPC1-202ENST00000420138 RTEL1Q9NZ71 1219 aa24.26■■□□□ 1.47
GPC1-202ENST00000420138 FAM196BA6NMK8 535 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms