RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 APOA5Q6Q788 366 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 DIS3L2Q8IYB7 885 aaKnown RBP9.7□□□□□ -0.86
SYNE1-211ENST00000413186 ZNF341Q9BYN7 854 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 CNOT7Q9UIV1 285 aaKnown RBP9.7□□□□□ -0.86
SYNE1-211ENST00000413186 SAMM50Q9Y512 469 aa9.7□□□□□ -0.86
SYNE1-211ENST00000413186 GSG1L2A8MUP6 293 aa9.69□□□□□ -0.86
SYNE1-211ENST00000413186 ZRSR2Q15696 482 aaKnown RBP9.69□□□□□ -0.86
SYNE1-211ENST00000413186 OTUD7BQ6GQQ9 843 aa9.69□□□□□ -0.86
SYNE1-211ENST00000413186 PDIA3P30101 505 aaKnown RBP9.69□□□□□ -0.86
SYNE1-211ENST00000413186 SSR1P43307 286 aaKnown RBP9.69□□□□□ -0.86
SYNE1-211ENST00000413186 C3orf67Q6ZVT6 689 aa9.69□□□□□ -0.86
SYNE1-211ENST00000413186 MTERF4Q7Z6M4 381 aaKnown RBP9.69□□□□□ -0.86
SYNE1-211ENST00000413186 LRRC47Q8N1G4 583 aaKnown RBP9.69□□□□□ -0.86
SYNE1-211ENST00000413186 ZSWIM5Q9P217 1185 aa9.69□□□□□ -0.86
SYNE1-211ENST00000413186 SMTNL1A8MU46 457 aa9.69□□□□□ -0.86
SYNE1-211ENST00000413186 SMCR8Q8TEV9 937 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-211ENST00000413186 ANO10Q9NW15 660 aa9.69□□□□□ -0.86
SYNE1-211ENST00000413186 MRPL11Q9Y3B7 192 aaKnown RBP9.69□□□□□ -0.86
SYNE1-211ENST00000413186 RGPD1P0DJD0 1748 aa9.69□□□□□ -0.86
SYNE1-211ENST00000413186 NONOQ15233 471 aaKnown RBP eCLIP9.68□□□□□ -0.86
SYNE1-211ENST00000413186 KRT40Q6A162 431 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 RNF214Q8ND24 703 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 TRIM5Q9C035 493 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 TPCN1Q9ULQ1 816 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 SH2B2O14492 632 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-211ENST00000413186 PPP4CP60510 307 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 SBK1Q52WX2 424 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 TAF3Q5VWG9 929 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 STXBP4Q6ZWJ1 553 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 MICALL2Q8IY33 904 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 MRPS27Q92552 414 aaKnown RBP9.68□□□□□ -0.86
SYNE1-211ENST00000413186 PHKBQ93100 1093 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 PSMD1Q99460 953 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 RNF26Q9BY78 433 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-211ENST00000413186 hCG_1984214I3L0E3 225 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 IL1R1P14778 569 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 CRY2Q49AN0 593 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 KRT79Q5XKE5 535 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 DTHD1Q6ZMT9 781 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 C15orf52Q6ZUT6 534 aaKnown RBP9.68□□□□□ -0.86
SYNE1-211ENST00000413186 CPXCR1Q8N123 301 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 REXO1Q8N1G1 1221 aaKnown RBP9.68□□□□□ -0.86
SYNE1-211ENST00000413186 ZNF713Q8N859 430 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-211ENST00000413186 KIFC2Q96AC6 838 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 DYNLL2Q96FJ2 89 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 GPR75-ASB3A0A0A6YYF3 556 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 PSMD14O00487 310 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 ORC4O43929 436 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 RCAN1P53805 252 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 TSGA10IPQ3SY00 556 aa9.68□□□□□ -0.86
SYNE1-211ENST00000413186 CYP2D7A0A087X1C5 515 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 ADD1P35611 737 aaKnown RBP9.67□□□□□ -0.86
SYNE1-211ENST00000413186 SYKP43405 635 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 MCF2L2Q86YR7 1114 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 STK24Q9Y6E0 443 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 FAM205AQ6ZU69 1335 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 RGPD5Q99666 1765 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 TMEM232C9JQI7 657 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 BMP3P12645 472 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 SCG2P13521 617 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 CACNB3P54284 484 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 DNM1Q05193 864 aaKnown RBP9.67□□□□□ -0.86
SYNE1-211ENST00000413186 CTR9Q6PD62 1173 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 FBXO11Q86XK2 927 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 BEGAINQ9BUH8 593 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 GTPBP4Q9BZE4 634 aaKnown RBP9.67□□□□□ -0.86
SYNE1-211ENST00000413186 SALL1Q9NSC2 1324 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 GDF11O95390 407 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 C12orf60Q5U649 245 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 FAM160B2Q86V87 743 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 GDPD2Q9HCC8 539 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 SLC5A4Q9NY91 659 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 NWD2Q9ULI1 1742 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 KCPQ6ZWJ8 1503 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 FLOT1O75955 427 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 FGFR1OPO95684 399 aaKnown RBP9.67□□□□□ -0.86
SYNE1-211ENST00000413186 FCHSD1Q86WN1 690 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 AMNQ9BXJ7 453 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 OSBPL5Q9H0X9 879 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-211ENST00000413186 HACL1Q9UJ83 578 aa9.67□□□□□ -0.86
SYNE1-211ENST00000413186 ESPNB1AK53 854 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 CBFA2T2O43439 604 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 GADL1Q6ZQY3 521 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 C2orf69Q8N8R5 385 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 GMPSP49915 693 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-211ENST00000413186 LETM2Q2VYF4 491 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 NSMFQ6X4W1 530 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 FAM151AQ8WW52 585 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 TSG101Q99816 390 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 RMND1Q9NWS8 449 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 SMCO2A6NFE2 343 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 JAK2O60674 1132 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 FOSP01100 380 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-211ENST00000413186 IFNAR1P17181 557 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 CCNA1P78396 465 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 MIGA2Q7L4E1 593 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 ZSCAN30Q86W11 494 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 SLC10A4Q96EP9 437 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 CNPY2Q9Y2B0 182 aa9.66□□□□□ -0.86
SYNE1-211ENST00000413186 USP54Q70EL1 1684 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms