RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 PAXBP1Q9Y5B6 917 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 SPATA31A1Q5TZJ5 1347 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 LINC00116Q8NCU8 138 aa12.64□□□□□ -0.39
PTPRF-204ENST00000412568 BAG6P46379 1132 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 GRAPQ13588 217 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 MAEAQ7L5Y9 396 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 GRAPLQ8TC17 118 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 SCLT1Q96NL6 688 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 LUC7LQ9NQ29 371 aaKnown RBP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 CTNND2Q9UQB3 1225 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 ATF5Q9Y2D1 282 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 FAM196BA6NMK8 535 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 SH2B2O14492 632 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 POLR3GO15318 223 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 SLC16A2P36021 539 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 LRMPQ12912 555 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 CCDC174Q6PII3 467 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 USP17L2Q6R6M4 530 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 PAXIP1Q6ZW49 1069 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 TSC1Q92574 1164 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 PGBD1Q96JS3 809 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 LZTFL1Q9NQ48 299 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 ATP8A2Q9NTI2 1148 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 MYO5BQ9ULV0 1848 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 NEDD4P46934 1319 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 AKR1B10O60218 316 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 SSR1P43307 286 aaKnown RBP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 NONOQ15233 471 aaKnown RBP eCLIP12.63□□□□□ -0.39
PTPRF-204ENST00000412568 CPDO75976 1380 aa12.63□□□□□ -0.39
PTPRF-204ENST00000412568 DDX39AO00148 427 aaKnown RBP12.62□□□□□ -0.39
PTPRF-204ENST00000412568 UBXN1Q04323 297 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 TMCO3Q6UWJ1 677 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 ERMNQ8TAM6 284 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 PYM1Q9BRP8 204 aaKnown RBP12.62□□□□□ -0.39
PTPRF-204ENST00000412568 KIAA1468Q9P260 1216 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 CAMTA2O94983 1202 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 SCG2P13521 617 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 PDE4DQ08499 809 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 PTGDRQ13258 359 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 POSTNQ15063 836 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 GRAMD1CQ8IYS0 662 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 FAM84BQ96KN1 310 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-204ENST00000412568 BBOX1O75936 387 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 FANCCQ00597 558 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 REXO1Q8N1G1 1221 aaKnown RBP12.62□□□□□ -0.39
PTPRF-204ENST00000412568 KIFC2Q96AC6 838 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 GDF11O95390 407 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 PLEKHA8P1O95397 391 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 FGFR1OPO95684 399 aaKnown RBP12.62□□□□□ -0.39
PTPRF-204ENST00000412568 EHMT1Q9H9B1 1298 aa12.62□□□□□ -0.39
PTPRF-204ENST00000412568 MYOM1P52179 1685 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 MST1RQ04912 1400 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 CDHR2Q9BYE9 1310 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 BLIDQ8IZY5 108 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 SH3RF3Q8TEJ3 882 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-204ENST00000412568 CENPHQ9H3R5 247 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 LRWD1Q9UFC0 647 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 KIF23Q02241 960 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-204ENST00000412568 NIM1KQ8IY84 436 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 ZNF408Q9H9D4 720 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 SIGLEC1Q9BZZ2 1709 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 TECP42680 631 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 TXNRD1Q16881 649 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 WWC2Q6AWC2 1192 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 NSMFQ6X4W1 530 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 CLEC17AQ6ZS10 378 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 KCTD1Q719H9 257 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 ZNF34Q8IZ26 560 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 SNX29Q8TEQ0 813 aa12.61□□□□□ -0.39
PTPRF-204ENST00000412568 C21orf2O43822 256 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 ADCY7P51828 1080 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 CERKLQ49MI3 558 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-204ENST00000412568 CCDC102AQ96A19 550 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 SPAG5Q96R06 1193 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 MRVI1Q9Y6F6 885 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 ZNF609O15014 1411 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 UBN2Q6ZU65 1347 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 GSG1L2A8MUP6 293 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 KIF20AO95235 890 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 NOP2P46087 812 aaKnown RBP12.6□□□□□ -0.39
PTPRF-204ENST00000412568 RESTQ13127 1097 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 SYT10Q6XYQ8 523 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 KDM6AO15550 1401 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-204ENST00000412568 XPO4Q9C0E2 1151 aaKnown RBP12.6□□□□□ -0.39
PTPRF-204ENST00000412568 PCDHA5Q9Y5H7 936 aa12.6□□□□□ -0.39
PTPRF-204ENST00000412568 CDC27P30260 824 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 PPP2R5BQ15173 497 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 NCAPH2Q6IBW4 605 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 SV2BQ7L1I2 683 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 TRAF5O00463 557 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 CSF1RP07333 972 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 GTF2F1P35269 517 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.59□□□□□ -0.394e-7■■□□□ 13.1
PTPRF-204ENST00000412568 CD209Q9NNX6 404 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 NRBP1Q9UHY1 535 aa12.59□□□□□ -0.39
PTPRF-204ENST00000412568 RIOK3O14730 519 aaKnown RBP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 ZNF500O60304 480 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 SMYD4Q8IYR2 804 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-204ENST00000412568 LINC00301Q8NCQ3 95 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms