RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ATP6V0A2Q9Y487 856 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 PLCD1P51178 756 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 MAPKAPK5Q8IW41 473 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 DHX40Q8IX18 779 aaKnown RBP23.16■■□□□ 1.3
USP39-204ENST00000409766 CEP57L1Q8IYX8 460 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 MKNK2Q9HBH9 465 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 PCDHB6Q9Y5E3 794 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 FAM205AQ6ZU69 1335 aa23.16■■□□□ 1.3
USP39-204ENST00000409766 DDX60LQ5H9U9 1706 aaKnown RBP23.15■■□□□ 1.3
USP39-204ENST00000409766 GOLGA6L19H0YKK7 550 aa23.15■■□□□ 1.3
USP39-204ENST00000409766 SRGNP10124 158 aa23.15■■□□□ 1.3
USP39-204ENST00000409766 TTC12Q9H892 705 aaPredicted RBP23.15■■□□□ 1.3
USP39-204ENST00000409766 CABP5Q9NP86 173 aa23.15■■□□□ 1.3
USP39-204ENST00000409766 KRT2P35908 639 aa23.15■■□□□ 1.3
USP39-204ENST00000409766 ZNF75DP51815 510 aa23.15■■□□□ 1.3
USP39-204ENST00000409766 TRIM5Q9C035 493 aa23.15■■□□□ 1.3
USP39-204ENST00000409766 NAT10Q9H0A0 1025 aaKnown RBP23.15■■□□□ 1.3
USP39-204ENST00000409766 TCP11L1Q9NUJ3 509 aa23.15■■□□□ 1.3
USP39-204ENST00000409766 FBXO2Q9UK22 296 aaPredicted RBP23.15■■□□□ 1.3
USP39-204ENST00000409766 OFD1O75665 1012 aa23.14■■□□□ 1.29
USP39-204ENST00000409766 PTPREP23469 700 aa23.14■■□□□ 1.29
USP39-204ENST00000409766 SARM1Q6SZW1 724 aa23.14■■□□□ 1.29
USP39-204ENST00000409766 SPC24Q8NBT2 197 aa23.14■■□□□ 1.29
USP39-204ENST00000409766 KAT14Q9H8E8 782 aa23.14■■□□□ 1.29
USP39-204ENST00000409766 BAZ2BQ9UIF8 2168 aaKnown RBP23.14■■□□□ 1.29
USP39-204ENST00000409766 GAKO14976 1311 aa23.14■■□□□ 1.29
USP39-204ENST00000409766 PLCG2P16885 1265 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 RHBDL3P58872 404 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 NPY5RQ15761 445 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 SLF2Q8IX21 1173 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 SAP30BPQ9UHR5 308 aaKnown RBP23.13■■□□□ 1.29
USP39-204ENST00000409766 GOLGA6L6A8MZA4 724 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 TPM3P06753 285 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 KIF5BP33176 963 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 DPCR1Q3MIW9 517 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 CCDC178Q5BJE1 867 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 POTEAQ6S8J7 498 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.13■■□□□ 1.29
USP39-204ENST00000409766 TEX11Q8IYF3 940 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 SLC44A5Q8NCS7 719 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 KCNH3Q9ULD8 1083 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 CEP131Q9UPN4 1083 aa23.13■■□□□ 1.29
USP39-204ENST00000409766 BECN2A8MW95 431 aa23.12■■□□□ 1.29
USP39-204ENST00000409766 TSPY3P0CV98 308 aa23.12■■□□□ 1.29
USP39-204ENST00000409766 TSPY8P0CW00 308 aa23.12■■□□□ 1.29
USP39-204ENST00000409766 NPR1P16066 1061 aa23.12■■□□□ 1.29
USP39-204ENST00000409766 KIAA2012Q0VF49 1180 aa23.12■■□□□ 1.29
USP39-204ENST00000409766 EARS2Q5JPH6 523 aaKnown RBP23.12■■□□□ 1.29
USP39-204ENST00000409766 ZNF444Q8N0Y2 327 aaPredicted RBP23.12■■□□□ 1.29
USP39-204ENST00000409766 PNMA1Q8ND90 353 aa23.12■■□□□ 1.29
USP39-204ENST00000409766 COA1Q9GZY4 146 aa23.12■■□□□ 1.29
USP39-204ENST00000409766 MORC2Q9Y6X9 1032 aaPredicted RBP23.12■■□□□ 1.29
USP39-204ENST00000409766 FLT1P17948 1338 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 USP17L3A6NCW0 530 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 USP17L4A6NCW7 530 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 FAM205CA6NFA0 338 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 RASA1P20936 1047 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 ZRSR1Q15695 479 aaKnown RBP23.11■■□□□ 1.29
USP39-204ENST00000409766 USP17L1Q7RTZ2 530 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 ZNF579Q8NAF0 562 aaKnown RBP23.11■■□□□ 1.29
USP39-204ENST00000409766 TNFRSF25Q93038 417 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 BPIFA3Q9BQP9 254 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 TUBE1Q9UJT0 475 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 MYH1P12882 1939 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 SCG2P13521 617 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 NLRP12P59046 1061 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 GTF2IP78347 998 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 GRIN1Q05586 938 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 PFKFB3Q16875 520 aaPredicted RBP23.11■■□□□ 1.29
USP39-204ENST00000409766 FLAD1Q8NFF5 587 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 SRPRBQ9Y5M8 271 aaKnown RBP23.11■■□□□ 1.29
USP39-204ENST00000409766 FOCADQ5VW36 1801 aa23.11■■□□□ 1.29
USP39-204ENST00000409766 TNS1Q9HBL0 1735 aaKnown RBP23.11■■□□□ 1.29
USP39-204ENST00000409766 RIMBP2O15034 1052 aa23.1■■□□□ 1.29
USP39-204ENST00000409766 LONRF3Q496Y0 759 aa23.1■■□□□ 1.29
USP39-204ENST00000409766 C16orf86Q6ZW13 317 aa23.1■■□□□ 1.29
USP39-204ENST00000409766 FBXW7Q969H0 707 aa23.1■■□□□ 1.29
USP39-204ENST00000409766 ZNF287Q9HBT7 754 aa23.1■■□□□ 1.29
USP39-204ENST00000409766 BRMS1Q9HCU9 246 aa23.1■■□□□ 1.29
USP39-204ENST00000409766 COL11A2P13942 1736 aaPredicted RBP23.1■■□□□ 1.29
USP39-204ENST00000409766 TRIM75PA6NK02 468 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 ATP2B1P20020 1258 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 KRBA2Q6ZNG9 492 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 AOPEPQ8N6M6 819 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 KCNF1Q9H3M0 494 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 BIN1O00499 593 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 MMP10P09238 476 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 CDC25BP30305 580 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 ALDH1B1P30837 517 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 SPECC1Q5M775 1068 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.09■■□□□ 1.29
USP39-204ENST00000409766 ELOA2Q8IYF1 753 aaPredicted RBP23.09■■□□□ 1.29
USP39-204ENST00000409766 PIBF1Q8WXW3 757 aa23.09■■□□□ 1.29
USP39-204ENST00000409766 VEGFAP15692 232 aaPredicted RBP23.08■■□□□ 1.29
USP39-204ENST00000409766 PDE6BP35913 854 aa23.08■■□□□ 1.29
USP39-204ENST00000409766 CDK8P49336 464 aa23.08■■□□□ 1.29
USP39-204ENST00000409766 GRM4Q14833 912 aa23.08■■□□□ 1.29
USP39-204ENST00000409766 OLFM4Q6UX06 510 aa23.08■■□□□ 1.29
USP39-204ENST00000409766 METTL16Q86W50 562 aaKnown RBP23.08■■□□□ 1.29
USP39-204ENST00000409766 FAM13BQ9NYF5 915 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms