RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 IRF5Q13568 498 aa23.24■■□□□ 1.31
SMARCB1-204ENST00000407422 GPATCH3Q96I76 525 aa23.24■■□□□ 1.31
SMARCB1-204ENST00000407422 KIAA1683Q9H0B3 1180 aa23.24■■□□□ 1.31
SMARCB1-204ENST00000407422 RBPJLQ9UBG7 517 aa23.24■■□□□ 1.31
SMARCB1-204ENST00000407422 PLXNB2O15031 1838 aa23.24■■□□□ 1.31
SMARCB1-204ENST00000407422 MPHOSPH10O00566 681 aaKnown RBP23.23■■□□□ 1.31
SMARCB1-204ENST00000407422 OTUD7AQ8TE49 926 aaPredicted RBP23.23■■□□□ 1.31
SMARCB1-204ENST00000407422 SHISA4Q96DD7 197 aa23.23■■□□□ 1.31
SMARCB1-204ENST00000407422 RNF208Q9H0X6 261 aa23.23■■□□□ 1.31
SMARCB1-204ENST00000407422 SLC4A4Q9Y6R1 1079 aa23.23■■□□□ 1.31
SMARCB1-204ENST00000407422 USP17L12C9JPN9 530 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 USP17L21D6R901 530 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 UBXN2AP68543 259 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 KBTBD3Q8NAB2 608 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 PXYLP1Q8TE99 480 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 UNC93B1Q9H1C4 597 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 GJD2Q9UKL4 321 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 INHAP05111 366 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 VCAM1P19320 739 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 USP14P54578 494 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 Q3C1V9 767 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 C12orf60Q5U649 245 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 GPRC5AQ8NFJ5 357 aa23.22■■□□□ 1.31
SMARCB1-204ENST00000407422 A0A1W2PRG0 241 aa23.21■■□□□ 1.31
SMARCB1-204ENST00000407422 PAGR1Q9BTK6 254 aa23.21■■□□□ 1.31
SMARCB1-204ENST00000407422 SWAP70Q9UH65 585 aa23.21■■□□□ 1.31
SMARCB1-204ENST00000407422 USP17L15C9J2P7 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L13C9JLJ4 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L11C9JVI0 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L18D6R9N7 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L22D6RA61 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L17D6RBQ6 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L19D6RCP7 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L20D6RJB6 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 GJB1P08034 283 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 USP17L24Q0WX57 530 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 OSBP2Q969R2 916 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 STRBPQ96SI9 672 aaKnown RBP23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 CEP290O15078 2479 aa23.2■■□□□ 1.3
SMARCB1-204ENST00000407422 AKR1B1P15121 316 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 ERVK-9P63128 1117 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 ERVK-24P63145 666 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 CATSPERGQ6ZRH7 1159 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 CLEC10AQ8IUN9 316 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 GJA8P48165 433 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 CDK8P49336 464 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 CTR9Q6PD62 1173 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 TMEM179Q6ZVK1 233 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 PI4K2BQ8TCG2 481 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 DDRGK1Q96HY6 314 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 PORCNQ9H237 461 aa23.19■■□□□ 1.3
SMARCB1-204ENST00000407422 TTC41PQ6P2S7 1318 aa23.18■■□□□ 1.3
SMARCB1-204ENST00000407422 RNF113AO15541 343 aaKnown RBP23.18■■□□□ 1.3
SMARCB1-204ENST00000407422 RPAP3Q9H6T3 665 aaPredicted RBP23.18■■□□□ 1.3
SMARCB1-204ENST00000407422 CNMDO75829 334 aa23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 C16orf86Q6ZW13 317 aa23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 SIAH1Q8IUQ4 282 aa23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 AMOTL1Q8IY63 956 aa23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 NKX2-3Q8TAU0 364 aa23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 U2AF1L4Q8WU68 220 aaKnown RBP23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 GTF3C2Q8WUA4 911 aaPredicted RBP23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 APPBP2Q92624 585 aa23.17■■□□□ 1.3
SMARCB1-204ENST00000407422 GSG1L2A8MUP6 293 aa23.16■■□□□ 1.3
SMARCB1-204ENST00000407422 KIAA1755Q5JYT7 1200 aa23.16■■□□□ 1.3
SMARCB1-204ENST00000407422 RABGAP1Q9Y3P9 1069 aa23.15■■□□□ 1.3
SMARCB1-204ENST00000407422 RLFQ13129 1914 aa23.15■■□□□ 1.3
SMARCB1-204ENST00000407422 M0R2C6 588 aa23.15■■□□□ 1.3
SMARCB1-204ENST00000407422 CYP2B6P20813 491 aa23.15■■□□□ 1.3
SMARCB1-204ENST00000407422 MAPK4P31152 587 aa23.15■■□□□ 1.3
SMARCB1-204ENST00000407422 TRIM32Q13049 653 aa23.15■■□□□ 1.3
SMARCB1-204ENST00000407422 SPDYE16A6NNV3 312 aaPredicted RBP23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 ERC2O15083 957 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 GPAA1O43292 621 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 GLRX3O76003 335 aaKnown RBP23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 SGPL1O95470 568 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 ZFYP08048 801 aaPredicted RBP23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 MX1P20591 662 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 ICA1Q05084 483 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 ANKRD45Q5TZF3 282 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 GPR142Q7Z601 462 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 CCAR1Q8IX12 1150 aaKnown RBP23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 CCDC17Q96LX7 622 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 DEFB118Q96PH6 123 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 BTBD7Q9P203 1132 aa23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 ARPP21Q9UBL0 812 aaPredicted RBP23.14■■□□□ 1.29
SMARCB1-204ENST00000407422 HMGCRP04035 888 aa23.13■■□□□ 1.29
SMARCB1-204ENST00000407422 LBX2Q6XYB7 198 aa23.13■■□□□ 1.29
SMARCB1-204ENST00000407422 STK11IPQ8N1F8 1099 aa23.13■■□□□ 1.29
SMARCB1-204ENST00000407422 TRIB2Q92519 343 aa23.13■■□□□ 1.29
SMARCB1-204ENST00000407422 NUDT12Q9BQG2 462 aa23.13■■□□□ 1.29
SMARCB1-204ENST00000407422 PAK6Q9NQU5 681 aaPredicted RBP23.13■■□□□ 1.29
SMARCB1-204ENST00000407422 SALL3Q9BXA9 1300 aa23.13■■□□□ 1.29
SMARCB1-204ENST00000407422 UBE2Q1Q7Z7E8 422 aa23.12■■□□□ 1.29
SMARCB1-204ENST00000407422 SPICE1Q8N0Z3 855 aa23.12■■□□□ 1.29
SMARCB1-204ENST00000407422 SEC62Q99442 399 aaKnown RBP23.12■■□□□ 1.29
SMARCB1-204ENST00000407422 EPB41L4AQ9HCS5 686 aaPredicted RBP23.12■■□□□ 1.29
SMARCB1-204ENST00000407422 TMX2Q9Y320 296 aa23.12■■□□□ 1.29
SMARCB1-204ENST00000407422 HDAC1Q13547 482 aaPredicted RBP23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 SBK1Q52WX2 424 aa23.11■■□□□ 1.29
SMARCB1-204ENST00000407422 GIMAP6Q6P9H5 292 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms