RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 AP4E1Q9UPM8 1137 aa6.74□□□□□ -1.33
HMGB3P18-201ENST00000406327 NOP58Q9Y2X3 529 aaKnown RBP6.74□□□□□ -1.33
HMGB3P18-201ENST00000406327 UPK3BL1B0FP48 263 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 UPK3BL2E5RIL1 263 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 DLL1O00548 723 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 RGS13O14921 159 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 SUSD5O60279 629 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 CAP2P40123 477 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 FMR1NBQ8N0W7 255 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 SMG8Q8ND04 991 aaKnown RBP6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 UBASH3BQ8TF42 649 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 CCDC74BQ96LY2 380 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 MRPL18Q9H0U6 180 aaKnown RBP6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 RRAGCQ9HB90 399 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 TJP2Q9UDY2 1190 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 PLAAQ9Y263 795 aa6.73□□□□□ -1.33
HMGB3P18-201ENST00000406327 A0A0A0MRY4 1105 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 CHURC1-FNTBB4DL54 471 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 DNAJA2O60884 412 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 DLGAP3O95886 979 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 ADH5P11766 374 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 GBP1P32455 592 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 PMS1P54277 932 aaKnown RBP6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 SQSTM1Q13501 440 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 COL9A3Q14050 684 aaPredicted RBP6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 ZYXQ15942 572 aaKnown RBP6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 MRM1Q6IN84 353 aaKnown RBP6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 FDX2Q6P4F2 183 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 ACAD11Q709F0 780 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 SPATC1Q76KD6 591 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 CYB5D2Q8WUJ1 264 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 FANCD2OSQ96PS1 177 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 SPATA9Q9BWV2 254 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 SUCOQ9UBS9 1254 aaKnown RBP6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 COL4A3BPQ9Y5P4 624 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 PTCH2Q9Y6C5 1203 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 LTBP3Q9NS15 1303 aa6.72□□□□□ -1.33
HMGB3P18-201ENST00000406327 ANKRD34BA5PLL1 514 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 CLEC3AO75596 197 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 SLC10A6Q3KNW5 377 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 ZMYM1Q5SVZ6 1142 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 ANKRD34AQ69YU3 496 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 IGF2-ASQ6U949 168 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 IPO9Q96P70 1041 aaKnown RBP6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 KRTAP4-12Q9BQ66 201 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 SSU72Q9NP77 194 aaKnown RBP6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 DISC1Q9NRI5 854 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 IFT57Q9NWB7 429 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 KCNK4Q9NYG8 393 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 PPP1R9AQ9ULJ8 1098 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 LEMD3Q9Y2U8 911 aa6.71□□□□□ -1.34
HMGB3P18-201ENST00000406327 C1QTNF9BB2RNN3 333 aa6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 DIAPH1O60610 1272 aaKnown RBP6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 CST3P01034 146 aaPredicted RBP6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 ELNP15502 786 aa6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 ITGB7P26010 798 aa6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 SOX4Q06945 474 aaPredicted RBP6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 TRIM28Q13263 835 aaKnown RBP6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 PRRT3Q5FWE3 981 aa6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 ZBTB38Q8NAP3 1195 aaPredicted RBP6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 KLHL6Q8WZ60 621 aa6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 SLC6A18Q96N87 628 aa6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 APBA2Q99767 749 aa6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 NOP53Q9NZM5 478 aaKnown RBP6.7□□□□□ -1.34
HMGB3P18-201ENST00000406327 FAM86C2PA6NEL3 165 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 GNB5O14775 395 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 GYS2P54840 703 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 RNF4P78317 190 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 TTLL4Q14679 1199 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 HEATR6Q6AI08 1181 aaKnown RBP6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 DYMQ7RTS9 669 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 MFSD2AQ8NA29 543 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 C12orf50Q8NA57 414 aaPredicted RBP6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 GPATCH3Q96I76 525 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 KIF2CQ99661 725 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 YIPF2Q9BWQ6 316 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 GBP3Q9H0R5 595 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 SEMA6BQ9H3T3 888 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 KANSL2Q9H9L4 492 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 PCDHB10Q9UN67 800 aa6.69□□□□□ -1.34
HMGB3P18-201ENST00000406327 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 RNGTTO60942 597 aaKnown RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 LRIG2O94898 1065 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 ASMTLO95671 621 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 POLR2BP30876 1174 aaKnown RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 NTF4P34130 210 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 ASPAP45381 313 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 SV2CQ496J9 727 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 KIAA1211Q6ZU35 1233 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 CD163Q86VB7 1156 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 SMYD4Q8IYR2 804 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 CRACR2BQ8N4Y2 399 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 CEP41Q9BYV8 373 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 FOXQ1Q9C009 403 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 GSX1Q9H4S2 264 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 METTL14Q9HCE5 456 aaKnown RBP6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 PCDH12Q9NPG4 1184 aa6.68□□□□□ -1.34
HMGB3P18-201ENST00000406327 PCOLCE2Q9UKZ9 415 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms