RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 BAZ2BQ9UIF8 2168 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 CCDC196A0A1B0GTZ2 297 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 hCG_1642624A0A1W2PR95 340 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 UBE2Q2LH0YL09 131 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 NPM3O75607 178 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 BRD1O95696 1058 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 TNNI2P48788 182 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 TROAPQ12815 778 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 RASA3Q14644 834 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 MCTP1Q6DN14 999 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 OTUD7BQ6GQQ9 843 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 CDC37L1Q7L3B6 337 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 FOXP4Q8IVH2 680 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 LRRC47Q8N1G4 583 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 CTCFLQ8NI51 663 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 SMARCC2Q8TAQ2 1214 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 TRPM4Q8TD43 1214 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 FAM151AQ8WW52 585 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 TMEM47Q9BQJ4 181 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 EHD4Q9H223 541 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 FAM217BQ9NTX9 383 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 GPRC5DQ9NZD1 345 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 CLIP2Q9UDT6 1046 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 HACL1Q9UJ83 578 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 ARFGEF1Q9Y6D6 1849 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 CDK5RAP2Q96SN8 1893 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 ZSCAN22P10073 491 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 FDPSP14324 419 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 LMOD1P29536 600 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 TNFAIP1Q13829 316 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 TPRNQ4KMQ1 711 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 CCDC178Q5BJE1 867 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 ANGEL2Q5VTE6 544 aaKnown RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 PRAMEF18Q5VWM3 479 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 RASGRP2Q7LDG7 609 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 ZBED3Q96IU2 234 aaPredicted RBP4.32□□□□□ -1.72
RTN4-208ENST00000404909 AIFM3Q96NN9 605 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 GBP4Q96PP9 640 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.32□□□□□ -1.72
RTN4-208ENST00000404909 GJB4Q9NTQ9 266 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 MTMR6Q9Y217 621 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 CNTNAP1P78357 1384 aa4.32□□□□□ -1.72
RTN4-208ENST00000404909 DDAH1O94760 285 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 PLEKHA8P1O95397 391 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 GOLGA8HP0CJ92 632 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 CALM1P0DP23 149 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 CALM2P0DP24 149 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 CALM3P0DP25 149 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 NCLP19338 710 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 AKAP17AQ02040 695 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 SSRP1Q08945 709 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 DPY19L2Q6NUT2 758 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 TRIM22Q8IYM9 498 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 C8orf76Q96K31 380 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 DEFB129Q9H1M3 183 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 TCP11L1Q9NUJ3 509 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 MTMR4Q9NYA4 1195 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 ZNF646O15015 1829 aaPredicted RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 LAMB1P07942 1786 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 PSME4Q14997 1843 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 GRIN3BO60391 1043 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 TTLL1O95922 423 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 F13A1P00488 732 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 GH2P01242 217 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 NT5C2P49902 561 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 SEPT2Q15019 361 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 NTRK3Q16288 839 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 ABCB5Q2M3G0 1257 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 FKBP1CQ5VVH2 108 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 FAM83AQ86UY5 434 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 CCDC17Q96LX7 622 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 ALG1Q9BT22 464 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 CABP5Q9NP86 173 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 GGA3Q9NZ52 723 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 HERC5Q9UII4 1024 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 ATRNL1Q5VV63 1379 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 DCAF8L1A6NGE4 600 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 SOCS7O14512 581 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 BAG4O95429 457 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 TOP1P11387 765 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 IFNAR1P17181 557 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 KIF5BP33176 963 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 GUCY1A2P33402 732 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 MCM4P33991 863 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 MMP14P50281 582 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 HIRAP54198 1017 aaPredicted RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 DDX60LQ5H9U9 1706 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 FAM173BQ6P4H8 233 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 USP17L2Q6R6M4 530 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 STAG2Q8N3U4 1231 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 RBM28Q9NW13 759 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 V9GY48 417 aaPredicted RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 GOLGA6L22H0YM25 854 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 RCAN1P53805 252 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 ICA1Q05084 483 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 RRP1BQ14684 758 aaKnown RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 PPP2R5BQ15173 497 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 TATDN1Q6P1N9 297 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 CPVLQ9H3G5 476 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms