RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 CTCFLQ8NI51 663 aaPredicted RBP29.76■■■□□ 2.35
CPNE1-205ENST00000401607 LEO1Q8WVC0 666 aaPredicted RBP29.76■■■□□ 2.35
CPNE1-205ENST00000401607 PRMT6Q96LA8 375 aaPredicted RBP29.76■■■□□ 2.35
CPNE1-205ENST00000401607 TDRD3Q9H7E2 651 aaKnown RBP29.75■■■□□ 2.35
CPNE1-205ENST00000401607 TMEM63CQ9P1W3 806 aa29.75■■■□□ 2.35
CPNE1-205ENST00000401607 SWAP70Q9UH65 585 aa29.75■■■□□ 2.35
CPNE1-205ENST00000401607 ZBTB12Q9Y330 459 aaPredicted RBP29.75■■■□□ 2.35
CPNE1-205ENST00000401607 HLA-DOAP06340 250 aa29.75■■■□□ 2.35
CPNE1-205ENST00000401607 SPATA32Q96LK8 384 aa29.75■■■□□ 2.35
CPNE1-205ENST00000401607 TMEM47Q9BQJ4 181 aa29.75■■■□□ 2.35
CPNE1-205ENST00000401607 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.75■■■□□ 2.35
CPNE1-205ENST00000401607 EHD4Q9H223 541 aa29.75■■■□□ 2.35
CPNE1-205ENST00000401607 BCS1LQ9Y276 419 aa29.75■■■□□ 2.35
CPNE1-205ENST00000401607 GOLGB1Q14789 3259 aaKnown RBP29.74■■■□□ 2.35
CPNE1-205ENST00000401607 NOVP48745 357 aa29.74■■■□□ 2.35
CPNE1-205ENST00000401607 TCP10Q12799 353 aa29.74■■■□□ 2.35
CPNE1-205ENST00000401607 MAP3K14Q99558 947 aa29.74■■■□□ 2.35
CPNE1-205ENST00000401607 STX8Q9UNK0 236 aa29.74■■■□□ 2.35
CPNE1-205ENST00000401607 MYH8P13535 1937 aa29.74■■■□□ 2.35
CPNE1-205ENST00000401607 SHMT1P34896 483 aa29.73■■■□□ 2.35
CPNE1-205ENST00000401607 CFAP45Q9UL16 551 aa29.73■■■□□ 2.35
CPNE1-205ENST00000401607 CNTNAP5Q8WYK1 1306 aa29.73■■■□□ 2.35
CPNE1-205ENST00000401607 PRPF3O43395 683 aaKnown RBP29.72■■■□□ 2.35
CPNE1-205ENST00000401607 CXCL9Q07325 125 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 TRIM29Q14134 588 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 ATL3Q6DD88 541 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 SH3BP5LQ7L8J4 393 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 BRAPQ7Z569 592 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 SRBD1Q8N5C6 995 aaKnown RBP29.72■■■□□ 2.35
CPNE1-205ENST00000401607 CEP95Q96GE4 821 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 USP28Q96RU2 1077 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 FTOQ9C0B1 505 aaKnown RBP eCLIP29.72■■■□□ 2.355e-10■□□□□ 9.7
CPNE1-205ENST00000401607 DHX36Q9H2U1 1008 aaKnown RBP29.72■■■□□ 2.35
CPNE1-205ENST00000401607 MYH6P13533 1939 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 DDTLA6NHG4 134 aaPredicted RBP29.72■■■□□ 2.35
CPNE1-205ENST00000401607 AKR1B1P15121 316 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 PKN1Q16512 942 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 ZNF396Q96N95 335 aaPredicted RBP29.72■■■□□ 2.35
CPNE1-205ENST00000401607 TAOK2Q9UL54 1235 aa29.72■■■□□ 2.35
CPNE1-205ENST00000401607 GRM4Q14833 912 aa29.71■■■□□ 2.35
CPNE1-205ENST00000401607 NLGN2Q8NFZ4 835 aa29.71■■■□□ 2.35
CPNE1-205ENST00000401607 HDAC9Q9UKV0 1011 aa29.71■■■□□ 2.35
CPNE1-205ENST00000401607 SPDYE2BA6NHP3 402 aa29.7■■■□□ 2.35
CPNE1-205ENST00000401607 SPDYE6P0CI01 402 aa29.7■■■□□ 2.35
CPNE1-205ENST00000401607 KIF5BP33176 963 aa29.7■■■□□ 2.35
CPNE1-205ENST00000401607 ZSCAN23Q3MJ62 389 aa29.7■■■□□ 2.35
CPNE1-205ENST00000401607 AGBL3Q8NEM8 1001 aa29.7■■■□□ 2.35
CPNE1-205ENST00000401607 DNAJC18Q9H819 358 aa29.7■■■□□ 2.35
CPNE1-205ENST00000401607 IGKV6D-41A0A0C4DH26 115 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 SLURP2P0DP57 97 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 MYSM1Q5VVJ2 828 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 V9GY48 417 aaPredicted RBP29.69■■■□□ 2.34
CPNE1-205ENST00000401607 ENTPD3O75355 529 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 AKAP17AQ02040 695 aaKnown RBP29.69■■■□□ 2.34
CPNE1-205ENST00000401607 TPRNQ4KMQ1 711 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 SHISA4Q96DD7 197 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 RCOR1Q9UKL0 485 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 GREB1LQ9C091 1923 aaPredicted RBP29.69■■■□□ 2.34
CPNE1-205ENST00000401607 LTBP3Q9NS15 1303 aa29.69■■■□□ 2.34
CPNE1-205ENST00000401607 MMP1P03956 469 aa29.68■■■□□ 2.34
CPNE1-205ENST00000401607 CEBPZQ03701 1054 aaKnown RBP29.68■■■□□ 2.34
CPNE1-205ENST00000401607 JDP2Q8WYK2 163 aa29.68■■■□□ 2.34
CPNE1-205ENST00000401607 MAD2L2Q9UI95 211 aa29.68■■■□□ 2.34
CPNE1-205ENST00000401607 ATRNL1Q5VV63 1379 aa29.68■■■□□ 2.34
CPNE1-205ENST00000401607 COL2A1P02458 1487 aaPredicted RBP29.68■■■□□ 2.34
CPNE1-205ENST00000401607 hCG_1642624A0A1W2PR95 340 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 FSD2A1L4K1 749 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 TOP1P11387 765 aaKnown RBP29.67■■■□□ 2.34
CPNE1-205ENST00000401607 U2AF2P26368 475 aaKnown RBP eCLIP29.67■■■□□ 2.349e-27■■■■□ 22.3
CPNE1-205ENST00000401607 CIAPIN1Q6FI81 312 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 STAG2Q8N3U4 1231 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 OGFOD1Q8N543 542 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 PI4KBQ9UBF8 816 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 KCNJ14Q9UNX9 436 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 ARFGEF1Q9Y6D6 1849 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 DLGAP5Q15398 846 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 PGBD1Q96JS3 809 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 MTMR4Q9NYA4 1195 aa29.67■■■□□ 2.34
CPNE1-205ENST00000401607 ZNF445P59923 1031 aa29.66■■■□□ 2.34
CPNE1-205ENST00000401607 ZSCAN29Q8IWY8 852 aaPredicted RBP29.66■■■□□ 2.34
CPNE1-205ENST00000401607 RASSF7Q02833 373 aa29.65■■■□□ 2.34
CPNE1-205ENST00000401607 RTEL1Q9NZ71 1219 aa29.65■■■□□ 2.34
CPNE1-205ENST00000401607 PALM3A6NDB9 673 aaPredicted RBP29.64■■■□□ 2.34
CPNE1-205ENST00000401607 FAM196BA6NMK8 535 aa29.64■■■□□ 2.34
CPNE1-205ENST00000401607 MTMR14Q8NCE2 650 aa29.64■■■□□ 2.34
CPNE1-205ENST00000401607 PRELPP51888 382 aa29.64■■■□□ 2.34
CPNE1-205ENST00000401607 RASGRP2Q7LDG7 609 aa29.64■■■□□ 2.34
CPNE1-205ENST00000401607 GAS2L3Q86XJ1 694 aa29.64■■■□□ 2.34
CPNE1-205ENST00000401607 DIS3L2Q8IYB7 885 aaKnown RBP29.64■■■□□ 2.34
CPNE1-205ENST00000401607 VPS54Q9P1Q0 977 aa29.64■■■□□ 2.34
CPNE1-205ENST00000401607 ZNF70Q9UC06 446 aaPredicted RBP29.64■■■□□ 2.34
CPNE1-205ENST00000401607 CLRN2A0PK11 232 aa29.63■■■□□ 2.33
CPNE1-205ENST00000401607 GNAQP50148 359 aa29.63■■■□□ 2.33
CPNE1-205ENST00000401607 SLC35G1Q2M3R5 365 aa29.63■■■□□ 2.33
CPNE1-205ENST00000401607 METTL16Q86W50 562 aaKnown RBP29.63■■■□□ 2.33
CPNE1-205ENST00000401607 CLEC10AQ8IUN9 316 aa29.63■■■□□ 2.33
CPNE1-205ENST00000401607 SYAP1Q96A49 352 aaPredicted RBP29.63■■■□□ 2.33
CPNE1-205ENST00000401607 TMOD2Q9NZR1 351 aa29.63■■■□□ 2.33
CPNE1-205ENST00000401607 MTMR7Q9Y216 660 aa29.63■■■□□ 2.33
CPNE1-205ENST00000401607 GNL2Q13823 731 aaKnown RBP29.62■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms