RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 A0A0U1RQG5 324 aaPredicted RBP13.68□□□□□ -0.22
SKA3-203ENST00000400018 GH2P01242 217 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 ECE1P42892 770 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 NFKBIBQ15653 356 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 IQCA1Q86XH1 822 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 SLC26A6Q9BXS9 759 aa13.68□□□□□ -0.22
SKA3-203ENST00000400018 LTBP3Q9NS15 1303 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 FKBP1AP62942 108 aaKnown RBP13.67□□□□□ -0.22
SKA3-203ENST00000400018 CEBPZQ03701 1054 aaKnown RBP13.67□□□□□ -0.22
SKA3-203ENST00000400018 SLC35G1Q2M3R5 365 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 LARP1BQ659C4 914 aaKnown RBP13.67□□□□□ -0.22
SKA3-203ENST00000400018 IDI2Q9BXS1 227 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 DEFB129Q9H1M3 183 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.67□□□□□ -0.22
SKA3-203ENST00000400018 CHMP5Q9NZZ3 219 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 SIPA1L1O43166 1804 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 CPLX1O14810 134 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 SLC16A2P36021 539 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 MCM2P49736 904 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 ANKRD1Q15327 319 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 GRIPAP1Q4V328 841 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 TTC6Q86TZ1 520 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 SHISA4Q96DD7 197 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 TMOD2Q9NZR1 351 aa13.67□□□□□ -0.22
SKA3-203ENST00000400018 USP17L5A8MUK1 530 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 H7C1D1 291 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 HLA-DOAP06340 250 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 SLC3A2P08195 630 aaKnown RBP13.66□□□□□ -0.22
SKA3-203ENST00000400018 FGRP09769 529 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 CERKLQ49MI3 558 aaPredicted RBP13.66□□□□□ -0.22
SKA3-203ENST00000400018 MCTP1Q6DN14 999 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 TTBK2Q6IQ55 1244 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 KCTD1Q719H9 257 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 PNMA1Q8ND90 353 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 ZKSCAN4Q969J2 545 aaPredicted RBP13.66□□□□□ -0.22
SKA3-203ENST00000400018 TRIM34Q9BYJ4 488 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 KCNJ14Q9UNX9 436 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 LAMB1P07942 1786 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 ORC4O43929 436 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 INPP5BP32019 993 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 ACER1Q8TDN7 264 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 ZBED3Q96IU2 234 aaPredicted RBP13.66□□□□□ -0.22
SKA3-203ENST00000400018 GPCPD1Q9NPB8 672 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 PI4KBQ9UBF8 816 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 PSME4Q14997 1843 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 MYO3BQ8WXR4 1341 aa13.66□□□□□ -0.22
SKA3-203ENST00000400018 TIAM2Q8IVF5 1701 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 A0A1W2PRG0 241 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 TROAPQ12815 778 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 KIAA1755Q5JYT7 1200 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 GPC2Q8N158 579 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 TMEM87BQ96K49 555 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 ZSCAN31Q96LW9 406 aaPredicted RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 SH2B1Q9NRF2 756 aaPredicted RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 MYO1BO43795 1136 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 HDLBPQ00341 1268 aaKnown RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 SART3Q15020 963 aaKnown RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 NOM1Q5C9Z4 860 aaKnown RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 HOMER1Q86YM7 354 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 SIAH1Q8IUQ4 282 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 SRBD1Q8N5C6 995 aaKnown RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 FANCBQ8NB91 859 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 TEPSINQ96N21 525 aa13.65□□□□□ -0.22
SKA3-203ENST00000400018 TFIP11Q9UBB9 837 aaKnown RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 ORC3Q9UBD5 711 aaPredicted RBP13.65□□□□□ -0.22
SKA3-203ENST00000400018 ZNF280AP59817 542 aaPredicted RBP13.64□□□□□ -0.23
SKA3-203ENST00000400018 NTRK3Q16288 839 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 RTN1Q16799 776 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 FAM184AQ8NB25 1140 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 CNKSR2Q8WXI2 1034 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 ZNF274Q96GC6 653 aaPredicted RBP13.64□□□□□ -0.23
SKA3-203ENST00000400018 KAT14Q9H8E8 782 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 STX6O43752 255 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 EEF2P13639 858 aaKnown RBP13.64□□□□□ -0.23
SKA3-203ENST00000400018 NCLP19338 710 aaKnown RBP13.64□□□□□ -0.23
SKA3-203ENST00000400018 GPKOWQ92917 476 aaPredicted RBP eCLIP13.64□□□□□ -0.23
SKA3-203ENST00000400018 ZNF408Q9H9D4 720 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 MTMR6Q9Y217 621 aa13.64□□□□□ -0.23
SKA3-203ENST00000400018 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.64□□□□□ -0.23
SKA3-203ENST00000400018 V9GY48 417 aaPredicted RBP13.64□□□□□ -0.23
SKA3-203ENST00000400018 POTECB2RU33 542 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 SGMS1Q86VZ5 419 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 FOCADQ5VW36 1801 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 TRAF5O00463 557 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 MAP1SQ66K74 1059 aaPredicted RBP13.63□□□□□ -0.23
SKA3-203ENST00000400018 FAM151AQ8WW52 585 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 VPS33BQ9H267 617 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 ALDH8A1Q9H2A2 487 aaPredicted RBP13.63□□□□□ -0.23
SKA3-203ENST00000400018 MTMR4Q9NYA4 1195 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 VPS54Q9P1Q0 977 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 PGAP2Q9UHJ9 254 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 TCHHQ07283 1943 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.63□□□□□ -0.23
SKA3-203ENST00000400018 ZBTB22O15209 634 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 CYTH3O43739 400 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 LIFRP42702 1097 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 CATIPQ7Z7H3 387 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 NEDD1Q8NHV4 660 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 MRIQ9BWK5 157 aa13.63□□□□□ -0.23
SKA3-203ENST00000400018 ROBO3Q96MS0 1386 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms