RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 EVI5O60447 810 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 MBD4O95243 580 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 INHAP05111 366 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 IRX3P78415 501 aaPredicted RBP16.17■□□□□ 0.18
VCX3A-202ENST00000398729 IRF5Q13568 498 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 ABCB5Q2M3G0 1257 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 SLFNL1Q499Z3 407 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 DEFB118Q96PH6 123 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 CRISPLD2Q9H0B8 497 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 CABP5Q9NP86 173 aa16.17■□□□□ 0.18
VCX3A-202ENST00000398729 PAK6Q9NQU5 681 aaPredicted RBP16.17■□□□□ 0.18
VCX3A-202ENST00000398729 A0A1W2PPC1 479 aa16.16■□□□□ 0.18
VCX3A-202ENST00000398729 TNPO2O14787 897 aaKnown RBP16.16■□□□□ 0.18
VCX3A-202ENST00000398729 HOXA7P31268 230 aaPredicted RBP16.16■□□□□ 0.18
VCX3A-202ENST00000398729 SHMT1P34896 483 aa16.16■□□□□ 0.18
VCX3A-202ENST00000398729 GABPAQ06546 454 aa16.16■□□□□ 0.18
VCX3A-202ENST00000398729 RAB3GAP1Q15042 981 aa16.16■□□□□ 0.18
VCX3A-202ENST00000398729 USP17L2Q6R6M4 530 aa16.16■□□□□ 0.18
VCX3A-202ENST00000398729 PAWRQ96IZ0 340 aaKnown RBP16.16■□□□□ 0.18
VCX3A-202ENST00000398729 FEZ1Q99689 392 aa16.16■□□□□ 0.18
VCX3A-202ENST00000398729 ATP8A2Q9NTI2 1148 aa16.16■□□□□ 0.18
VCX3A-202ENST00000398729 AMOTL1Q8IY63 956 aa16.15■□□□□ 0.18
VCX3A-202ENST00000398729 COA7Q96BR5 231 aa16.15■□□□□ 0.18
VCX3A-202ENST00000398729 DDRGK1Q96HY6 314 aa16.15■□□□□ 0.18
VCX3A-202ENST00000398729 TAOK2Q9UL54 1235 aa16.15■□□□□ 0.18
VCX3A-202ENST00000398729 PRKAB2O43741 272 aa16.14■□□□□ 0.17
VCX3A-202ENST00000398729 CHGBP05060 677 aa16.14■□□□□ 0.17
VCX3A-202ENST00000398729 KBTBD3Q8NAB2 608 aa16.14■□□□□ 0.17
VCX3A-202ENST00000398729 DIS3LQ8TF46 1054 aaKnown RBP16.14■□□□□ 0.17
VCX3A-202ENST00000398729 CRBNQ96SW2 442 aa16.14■□□□□ 0.17
VCX3A-202ENST00000398729 EMILIN3Q9NT22 766 aa16.14■□□□□ 0.17
VCX3A-202ENST00000398729 MPHOSPH10O00566 681 aaKnown RBP16.13■□□□□ 0.17
VCX3A-202ENST00000398729 CYP2D6P10635 497 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 CAPN2P17655 700 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 USP14P54578 494 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 HERVK_113P62684 666 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 ZYXQ15942 572 aaKnown RBP16.13■□□□□ 0.17
VCX3A-202ENST00000398729 TSHZ3Q63HK5 1081 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 C12orf42Q96LP6 360 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 P2RX7Q99572 595 aaKnown RBP16.13■□□□□ 0.17
VCX3A-202ENST00000398729 GDF15Q99988 308 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 KIAA1683Q9H0B3 1180 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 PUS7LQ9H0K6 701 aaKnown RBP16.13■□□□□ 0.17
VCX3A-202ENST00000398729 SWAP70Q9UH65 585 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 GJD2Q9UKL4 321 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 SLC4A4Q9Y6R1 1079 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 BAZ2AQ9UIF9 1905 aaKnown RBP16.13■□□□□ 0.17
VCX3A-202ENST00000398729 TTC41PQ6P2S7 1318 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 UNC80Q8N2C7 3258 aa16.13■□□□□ 0.17
VCX3A-202ENST00000398729 LAMA2P24043 3122 aaKnown RBP16.12■□□□□ 0.17
VCX3A-202ENST00000398729 ERC2O15083 957 aa16.12■□□□□ 0.17
VCX3A-202ENST00000398729 MNX1P50219 401 aaPredicted RBP16.12■□□□□ 0.17
VCX3A-202ENST00000398729 EVX2Q03828 476 aa16.12■□□□□ 0.17
VCX3A-202ENST00000398729 GTF3C2Q8WUA4 911 aaPredicted RBP16.12■□□□□ 0.17
VCX3A-202ENST00000398729 MORF4L1Q9UBU8 362 aa16.12■□□□□ 0.17
VCX3A-202ENST00000398729 ZBTB47Q9UFB7 747 aaPredicted RBP16.12■□□□□ 0.17
VCX3A-202ENST00000398729 ALPK3Q96L96 1907 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L12C9JPN9 530 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L21D6R901 530 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 ZFYP08048 801 aaPredicted RBP16.11■□□□□ 0.17
VCX3A-202ENST00000398729 GUCY1A2P33402 732 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 BMP8BP34820 402 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 TRIM32Q13049 653 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 SEPT2Q15019 361 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 LRRFIP1Q32MZ4 808 aaKnown RBP16.11■□□□□ 0.17
VCX3A-202ENST00000398729 C12orf60Q5U649 245 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 SLC44A5Q8NCS7 719 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 GPRC5AQ8NFJ5 357 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 ACER1Q8TDN7 264 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 DYNLL2Q96FJ2 89 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 MYH8P13535 1937 aa16.11■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L15C9J2P7 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L13C9JLJ4 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L11C9JVI0 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L18D6R9N7 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L22D6RA61 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L17D6RBQ6 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L19D6RCP7 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L20D6RJB6 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 GLRX3O76003 335 aaKnown RBP16.1■□□□□ 0.17
VCX3A-202ENST00000398729 USP17L24Q0WX57 530 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 TMEM179Q6ZVK1 233 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 NECAB2Q7Z6G3 386 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 APPBP2Q92624 585 aa16.1■□□□□ 0.17
VCX3A-202ENST00000398729 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.1■□□□□ 0.17
VCX3A-202ENST00000398729 CYP2D7A0A087X1C5 515 aa16.09■□□□□ 0.17
VCX3A-202ENST00000398729 RNF113AO15541 343 aaKnown RBP16.09■□□□□ 0.17
VCX3A-202ENST00000398729 VCAM1P19320 739 aa16.09■□□□□ 0.17
VCX3A-202ENST00000398729 CCAR1Q8IX12 1150 aaKnown RBP16.09■□□□□ 0.17
VCX3A-202ENST00000398729 CCDC17Q96LX7 622 aa16.09■□□□□ 0.17
VCX3A-202ENST00000398729 STRBPQ96SI9 672 aaKnown RBP16.09■□□□□ 0.17
VCX3A-202ENST00000398729 TXNRD2Q9NNW7 524 aa16.09■□□□□ 0.17
VCX3A-202ENST00000398729 ARPP21Q9UBL0 812 aaPredicted RBP16.09■□□□□ 0.17
VCX3A-202ENST00000398729 MX1P20591 662 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 CDK8P49336 464 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 ERVK-9P63128 1117 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 ERVK-24P63145 666 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 HDAC1Q13547 482 aaPredicted RBP16.08■□□□□ 0.16
VCX3A-202ENST00000398729 AAMPQ13685 434 aa16.08■□□□□ 0.16
VCX3A-202ENST00000398729 ANKRD45Q5TZF3 282 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms