RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 CCDC152Q4G0S7 254 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 FCHSD1Q86WN1 690 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 NHSL1Q5SYE7 1610 aa23.51■■□□□ 1.35
CLK3-202ENST00000395066 BCORQ6W2J9 1755 aa23.5■■□□□ 1.35
CLK3-202ENST00000395066 MYH6P13533 1939 aa23.5■■□□□ 1.35
CLK3-202ENST00000395066 MAGEB6P1A0A0J9YX57 407 aa23.5■■□□□ 1.35
CLK3-202ENST00000395066 EFCAB8A8MWE9 144 aa23.5■■□□□ 1.35
CLK3-202ENST00000395066 ATP6V1AP38606 617 aa23.5■■□□□ 1.35
CLK3-202ENST00000395066 ZNF174Q15697 407 aa23.5■■□□□ 1.35
CLK3-202ENST00000395066 SYMPKQ92797 1274 aaKnown RBP23.5■■□□□ 1.35
CLK3-202ENST00000395066 SOWAHDA6NJG2 315 aa23.5■■□□□ 1.35
CLK3-202ENST00000395066 AKAP17AQ02040 695 aaKnown RBP23.5■■□□□ 1.35
CLK3-202ENST00000395066 RNF41Q9H4P4 317 aaPredicted RBP23.5■■□□□ 1.35
CLK3-202ENST00000395066 BAZ2AQ9UIF9 1905 aaKnown RBP23.49■■□□□ 1.35
CLK3-202ENST00000395066 TRIM75PA6NK02 468 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 C3orf67Q6ZVT6 689 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 NMT2O60551 498 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 TPM1P09493 284 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 PLCD1P51178 756 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 SLC4A8Q2Y0W8 1093 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 NUTM2AQ8IVF1 878 aaPredicted RBP23.49■■□□□ 1.35
CLK3-202ENST00000395066 ZNF579Q8NAF0 562 aaKnown RBP23.49■■□□□ 1.35
CLK3-202ENST00000395066 ESR2Q92731 530 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 MRPL44Q9H9J2 332 aaKnown RBP23.49■■□□□ 1.35
CLK3-202ENST00000395066 DISP2A7MBM2 1401 aa23.49■■□□□ 1.35
CLK3-202ENST00000395066 ADAMTS3O15072 1205 aa23.48■■□□□ 1.35
CLK3-202ENST00000395066 CAMTA2O94983 1202 aa23.48■■□□□ 1.35
CLK3-202ENST00000395066 CCDC87Q9NVE4 849 aa23.48■■□□□ 1.35
CLK3-202ENST00000395066 COL1A1P02452 1464 aaPredicted RBP23.48■■□□□ 1.35
CLK3-202ENST00000395066 TAF1P21675 1872 aa23.48■■□□□ 1.35
CLK3-202ENST00000395066 NR1I3Q14994 352 aa23.48■■□□□ 1.35
CLK3-202ENST00000395066 TMTC2Q8N394 836 aa23.48■■□□□ 1.35
CLK3-202ENST00000395066 CEP131Q9UPN4 1083 aa23.48■■□□□ 1.35
CLK3-202ENST00000395066 MYO1BO43795 1136 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 NTSR2O95665 410 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 CASQ1P31415 396 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 ZSCAN10Q96SZ4 725 aaPredicted RBP23.47■■□□□ 1.35
CLK3-202ENST00000395066 RNF26Q9BY78 433 aaPredicted RBP23.47■■□□□ 1.35
CLK3-202ENST00000395066 DACH1Q9UI36 760 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 STX10O60499 249 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 VEGFAP15692 232 aaPredicted RBP23.47■■□□□ 1.35
CLK3-202ENST00000395066 KRT2P35908 639 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 FUT2Q10981 343 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 ITPK1Q13572 414 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 IFIT1BQ5T764 474 aaKnown RBP23.47■■□□□ 1.35
CLK3-202ENST00000395066 SMIM5Q71RC9 77 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 ELOA2Q8IYF1 753 aaPredicted RBP23.47■■□□□ 1.35
CLK3-202ENST00000395066 SPATA20Q8TB22 786 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 ZNF384Q8TF68 577 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 PAGE5Q96GU1 130 aa23.47■■□□□ 1.35
CLK3-202ENST00000395066 APTXQ7Z2E3 356 aaKnown RBP23.46■■□□□ 1.35
CLK3-202ENST00000395066 RIOK1Q9BRS2 568 aaKnown RBP23.46■■□□□ 1.35
CLK3-202ENST00000395066 PHF20Q9BVI0 1012 aa23.46■■□□□ 1.35
CLK3-202ENST00000395066 BLZF1Q9H2G9 400 aa23.46■■□□□ 1.35
CLK3-202ENST00000395066 LZTFL1Q9NQ48 299 aa23.46■■□□□ 1.35
CLK3-202ENST00000395066 CICQ96RK0 1608 aaPredicted RBP23.46■■□□□ 1.35
CLK3-202ENST00000395066 DPYDQ12882 1025 aa23.46■■□□□ 1.35
CLK3-202ENST00000395066 ZSWIM4Q9H7M6 989 aa23.46■■□□□ 1.35
CLK3-202ENST00000395066 ZKSCAN7Q9P0L1 754 aaPredicted RBP23.46■■□□□ 1.35
CLK3-202ENST00000395066 RBL2Q08999 1139 aa23.46■■□□□ 1.35
CLK3-202ENST00000395066 TEX35Q5T0J7 233 aa23.46■■□□□ 1.35
CLK3-202ENST00000395066 SYNRGQ9UMZ2 1314 aa23.45■■□□□ 1.35
CLK3-202ENST00000395066 A0A1B0GTH6 734 aa23.45■■□□□ 1.34
CLK3-202ENST00000395066 ZBTB9Q96C00 473 aa23.45■■□□□ 1.34
CLK3-202ENST00000395066 AK7Q96M32 723 aa23.45■■□□□ 1.34
CLK3-202ENST00000395066 AATFQ9NY61 560 aaKnown RBP eCLIP23.45■■□□□ 1.34
CLK3-202ENST00000395066 ZBTB22O15209 634 aa23.45■■□□□ 1.34
CLK3-202ENST00000395066 ATP8B1O43520 1251 aa23.45■■□□□ 1.34
CLK3-202ENST00000395066 TRIML1Q8N9V2 468 aa23.45■■□□□ 1.34
CLK3-202ENST00000395066 KIFC2Q96AC6 838 aa23.45■■□□□ 1.34
CLK3-202ENST00000395066 FAM47AQ5JRC9 791 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 RAD9BQ6WBX8 426 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 RTL9Q8NET4 1388 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 POLR3GO15318 223 aaPredicted RBP23.44■■□□□ 1.34
CLK3-202ENST00000395066 KLRK1P26718 216 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 NPY5RQ15761 445 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 KANK3Q6NY19 840 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 CATIPQ7Z7H3 387 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 IGSF22Q8N9C0 903 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 JAG2Q9Y219 1238 aa23.44■■□□□ 1.34
CLK3-202ENST00000395066 PLCH1Q4KWH8 1693 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 GOLGA6L9A6NEM1 432 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 CCT6AP40227 531 aaKnown RBP23.43■■□□□ 1.34
CLK3-202ENST00000395066 KCNQ4P56696 695 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 TROAPQ12815 778 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 CUL4BQ13620 913 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 BCL9LQ86UU0 1499 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 AKR1B15C9JRZ8 316 aaPredicted RBP23.43■■□□□ 1.34
CLK3-202ENST00000395066 PPP2R3AQ06190 1150 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 PTGDRQ13258 359 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 CCDC12Q8WUD4 166 aaPredicted RBP23.43■■□□□ 1.34
CLK3-202ENST00000395066 TMEM51Q9NW97 253 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 DOT1LQ8TEK3 1739 aa23.43■■□□□ 1.34
CLK3-202ENST00000395066 USP17L12C9JPN9 530 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 USP17L21D6R901 530 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 XBP1P17861 261 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 IRX5P78411 483 aaPredicted RBP23.42■■□□□ 1.34
CLK3-202ENST00000395066 MAP3K9P80192 1104 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 CTNND2Q9UQB3 1225 aa23.42■■□□□ 1.34
CLK3-202ENST00000395066 MRFAP1Q9Y605 127 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms