RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 RIOK1Q9BRS2 568 aaKnown RBP14.74□□□□□ -0.05
USP49-203ENST00000394253 MIS12Q9H081 205 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 SCYL1Q96KG9 808 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 ERBINQ96RT1 1412 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 KLF18A0A0U1RQI7 1052 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 CASP2P42575 452 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 DNM1Q05193 864 aaKnown RBP14.74□□□□□ -0.05
USP49-203ENST00000394253 RAB44Q7Z6P3 723 aaPredicted RBP14.74□□□□□ -0.05
USP49-203ENST00000394253 CDKL2Q92772 493 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 FGD4Q96M96 766 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 GSTA4O15217 222 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 ZBTB24O43167 697 aaPredicted RBP14.74□□□□□ -0.05
USP49-203ENST00000394253 STX1BP61266 288 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 NFE2L2Q16236 605 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 TEX9Q8N6V9 391 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 ZFYVE1Q9HBF4 777 aa14.74□□□□□ -0.05
USP49-203ENST00000394253 H3BRJ5 948 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 TRIM59Q8IWR1 403 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 P4HA1P13674 534 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 VTI1AQ96AJ9 217 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 NEUROG2Q9H2A3 272 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 SLC13A4Q9UKG4 626 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 SESN1Q9Y6P5 492 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 CCHCR1Q8TD31 782 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 ZBTB9Q96C00 473 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 ZSCAN32Q9NX65 697 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 RNASE9P60153 205 aaKnown RBP14.73□□□□□ -0.05
USP49-203ENST00000394253 BBOF1Q8ND07 529 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 RASGRF2O14827 1237 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 PMS1P54277 932 aaKnown RBP14.73□□□□□ -0.05
USP49-203ENST00000394253 DAB2P98082 770 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 SNX21Q969T3 373 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 CNOT10Q9H9A5 744 aaKnown RBP14.73□□□□□ -0.05
USP49-203ENST00000394253 AMFRQ9UKV5 643 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 GNAT2P19087 354 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 ATG16L1Q676U5 607 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 HAUS3Q68CZ6 603 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 ARHGAP10A1A4S6 786 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 NBPF9Q3BBW0 867 aa14.73□□□□□ -0.05
USP49-203ENST00000394253 DDX54Q8TDD1 881 aaKnown RBP14.73□□□□□ -0.05
USP49-203ENST00000394253 TTC22Q5TAA0 569 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 PODNQ7Z5L7 613 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 FBXL13Q8NEE6 735 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 HYOU1Q9Y4L1 999 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 NUTM2BA6NNL0 878 aaPredicted RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 NUTM2EB1AL46 878 aaPredicted RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 YWHAEP62258 255 aaKnown RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 OLFM3Q96PB7 478 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 HARSP12081 509 aaKnown RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 BLVRAP53004 296 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 TRIML2Q8N7C3 387 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 CARSP49589 748 aaKnown RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 ANKRD42Q8N9B4 389 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 INTS4Q96HW7 963 aaKnown RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 GSDMAQ96QA5 445 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 IFT122Q9HBG6 1241 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 SUCLA2Q9P2R7 463 aaPredicted RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 RRP15Q9Y3B9 282 aaKnown RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 PDS5BQ9NTI5 1447 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 PSDA5PKW4 1024 aaPredicted RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 DMTNQ08495 405 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 IFT88Q13099 833 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 HP1BP3Q5SSJ5 553 aaPredicted RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 GLE1Q53GS7 698 aaKnown RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 ESCO1Q5FWF5 840 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 PDZD4Q76G19 769 aaPredicted RBP14.72□□□□□ -0.05
USP49-203ENST00000394253 ING2Q9H160 280 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 JRKLQ9Y4A0 524 aa14.72□□□□□ -0.05
USP49-203ENST00000394253 H0YC42 278 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 IFNA8P32881 189 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 ZC3H18Q86VM9 953 aaKnown RBP14.71□□□□□ -0.05
USP49-203ENST00000394253 CCDC85AQ96PX6 553 aaPredicted RBP14.71□□□□□ -0.05
USP49-203ENST00000394253 EFCAB8A8MWE9 144 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 OR9Q1Q8NGQ5 310 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 ACTR5Q9H9F9 607 aaPredicted RBP14.71□□□□□ -0.05
USP49-203ENST00000394253 SMARCA5O60264 1052 aaPredicted RBP14.71□□□□□ -0.05
USP49-203ENST00000394253 GNA14O95837 355 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 DACH2Q96NX9 599 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 SND1Q7KZF4 910 aaKnown RBP eCLIP14.71□□□□□ -0.05
USP49-203ENST00000394253 SRRM1Q8IYB3 904 aaKnown RBP14.71□□□□□ -0.05
USP49-203ENST00000394253 CSRNP1Q96S65 589 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 ECE1P42892 770 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 CCDC15Q0P6D6 951 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 ART3Q13508 389 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 NBPF10Q6P3W6 841 aaKnown RBP14.71□□□□□ -0.05
USP49-203ENST00000394253 APLFQ8IW19 511 aaPredicted RBP14.71□□□□□ -0.05
USP49-203ENST00000394253 NINQ8N4C6 2090 aa14.71□□□□□ -0.05
USP49-203ENST00000394253 PRR23D1E9PI22 279 aaPredicted RBP14.71□□□□□ -0.06
USP49-203ENST00000394253 PRR23D2P0DMB1 279 aaPredicted RBP14.71□□□□□ -0.06
USP49-203ENST00000394253 CARD6Q9BX69 1037 aa14.71□□□□□ -0.06
USP49-203ENST00000394253 MCF2LO15068 1137 aa14.71□□□□□ -0.06
USP49-203ENST00000394253 STMN3Q9NZ72 180 aa14.71□□□□□ -0.06
USP49-203ENST00000394253 TPCN1Q9ULQ1 816 aa14.71□□□□□ -0.06
USP49-203ENST00000394253 TRPC1P48995 793 aa14.7□□□□□ -0.06
USP49-203ENST00000394253 ATP1A2P50993 1020 aa14.7□□□□□ -0.06
USP49-203ENST00000394253 RCN2Q14257 317 aa14.7□□□□□ -0.06
USP49-203ENST00000394253 EP400NLQ6ZTU2 488 aa14.7□□□□□ -0.06
USP49-203ENST00000394253 TMEM247A6NEH6 219 aa14.7□□□□□ -0.06
USP49-203ENST00000394253 KLHL29Q96CT2 875 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms