RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 VEGFAP15692 232 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-205ENST00000392004 MCM7P33993 719 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 HSPA4P34932 840 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 HMGN5P82970 282 aaKnown RBP11.81□□□□□ -0.52
COL6A3-205ENST00000392004 MOB2Q70IA6 237 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 GSG1L2A8MUP6 293 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 NBPF12Q5TAG4 269 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-205ENST00000392004 TBC1D10CQ8IV04 446 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 MAP4K1Q92918 833 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 PGBD1Q96JS3 809 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 PCMTD1Q96MG8 357 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-205ENST00000392004 BMP2KQ9NSY1 1161 aaPredicted RBP11.81□□□□□ -0.52
COL6A3-205ENST00000392004 TAF6LQ9Y6J9 622 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 IDEP14735 1019 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 HMGCS2P54868 508 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 HOOK2Q96ED9 719 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 GJB4Q9NTQ9 266 aa11.81□□□□□ -0.52
COL6A3-205ENST00000392004 AHDC1Q5TGY3 1603 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-205ENST00000392004 AKR1B1P15121 316 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 GNAQP50148 359 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 ZNF157P51786 506 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-205ENST00000392004 ADGRA1Q86SQ6 560 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 RGPD5Q99666 1765 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 ANKRD35Q8N283 1001 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 OSBPL3Q9H4L5 887 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 UTYO14607 1347 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 RASGRP4Q8TDF6 673 aa11.8□□□□□ -0.52
COL6A3-205ENST00000392004 ARID4AP29374 1257 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-205ENST00000392004 HOXA10P31260 410 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-205ENST00000392004 PKP1Q13835 747 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 ZNF174Q15697 407 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 ME3Q16798 604 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 CTR9Q6PD62 1173 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 NMRK2Q9NPI5 230 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 PRDM10Q9NQV6 1147 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 SETD1AO15047 1707 aaKnown RBP11.79□□□□□ -0.52
COL6A3-205ENST00000392004 PIK3AP1Q6ZUJ8 805 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 CEP95Q96GE4 821 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 TPCN1Q9ULQ1 816 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 MYO3BQ8WXR4 1341 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 BIN1O00499 593 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 SPECC1Q5M775 1068 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 KLHL10Q6JEL2 608 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 GPT2Q8TD30 523 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 TMEM87BQ96K49 555 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 GOPCQ9HD26 462 aa11.79□□□□□ -0.52
COL6A3-205ENST00000392004 ZBED4O75132 1171 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 INPP5BP32019 993 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 ZFPM1Q8IX07 1006 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 COA7Q96BR5 231 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 AIFM3Q96NN9 605 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 MKRN1Q9UHC7 482 aaKnown RBP11.78□□□□□ -0.52
COL6A3-205ENST00000392004 GOLGB1Q14789 3259 aaKnown RBP11.78□□□□□ -0.52
COL6A3-205ENST00000392004 WNT10BO00744 389 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 BACH1O14867 736 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 MATR3P43243 847 aaKnown RBP eCLIP11.78□□□□□ -0.52
COL6A3-205ENST00000392004 ANAPC15P60006 121 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 CCDC12Q8WUD4 166 aaPredicted RBP11.78□□□□□ -0.52
COL6A3-205ENST00000392004 DHX36Q9H2U1 1008 aaKnown RBP11.78□□□□□ -0.52
COL6A3-205ENST00000392004 TMEM63CQ9P1W3 806 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 BAZ2BQ9UIF8 2168 aaKnown RBP11.78□□□□□ -0.52
COL6A3-205ENST00000392004 CERS5Q8N5B7 392 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 JMYQ8N9B5 988 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 FANCBQ8NB91 859 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 AS3MTQ9HBK9 375 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 RGPD2P0DJD1 1756 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 AKAP12Q02952 1782 aa11.78□□□□□ -0.52
COL6A3-205ENST00000392004 EEF2P13639 858 aaKnown RBP11.77□□□□□ -0.52
COL6A3-205ENST00000392004 DNM1Q05193 864 aaKnown RBP11.77□□□□□ -0.52
COL6A3-205ENST00000392004 FAM83BQ5T0W9 1011 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 MAEAQ7L5Y9 396 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 CCDC94Q9BW85 323 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-205ENST00000392004 KANSL2Q9H9L4 492 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 C6orf50Q9HD87 102 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 RTEL1Q9NZ71 1219 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 COL16A1Q07092 1604 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-205ENST00000392004 PLEKHG2Q9H7P9 1386 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 ASTN2O75129 1339 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-205ENST00000392004 FLT1P17948 1338 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 NEDD4P46934 1319 aa11.77□□□□□ -0.52
COL6A3-205ENST00000392004 GOLGA6L19H0YKK7 550 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 TRAF5O00463 557 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 ASNSP08243 561 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 CCDC178Q5BJE1 867 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 CCDC47Q96A33 483 aaKnown RBP11.77□□□□□ -0.53
COL6A3-205ENST00000392004 PCDHA1Q9Y5I3 950 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 TESPA1A2RU30 521 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-205ENST00000392004 TTLL1O95922 423 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 CERS3Q8IU89 383 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 FOXP4Q8IVH2 680 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-205ENST00000392004 CCPG1Q9ULG6 757 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 RTL9Q8NET4 1388 aa11.77□□□□□ -0.53
COL6A3-205ENST00000392004 DDTLA6NHG4 134 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-205ENST00000392004 FGFR2P21802 821 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 UBA7P41226 1012 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 TRPM4Q8TD43 1214 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 MTMR2Q13614 643 aa11.76□□□□□ -0.53
COL6A3-205ENST00000392004 OSBPL5Q9H0X9 879 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-205ENST00000392004 HOXA13P31271 388 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-205ENST00000392004 EVX2Q03828 476 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms