RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PAXBP1Q9Y5B6 917 aa11.03□□□□□ -0.64
COL6A3-204ENST00000392003 RGL2O15211 777 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 SFPQP23246 707 aaKnown RBP eCLIP11.02□□□□□ -0.65
COL6A3-204ENST00000392003 MYL5Q02045 173 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 SLC10A5Q5PT55 438 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 SGSM3Q96HU1 749 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 DACH1Q9UI36 760 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 TUBE1Q9UJT0 475 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 FAM237AA0A1B0GTK4 181 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 UBE2Q2LH0YL09 131 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 NFIXQ14938 502 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 PTPN14Q15678 1187 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 KANK3Q6NY19 840 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 ADGRA1Q86SQ6 560 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 FEZ2Q9UHY8 353 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-204ENST00000392003 MYH14Q7Z406 1995 aaKnown RBP11.02□□□□□ -0.65
COL6A3-204ENST00000392003 TIAM2Q8IVF5 1701 aa11.02□□□□□ -0.65
COL6A3-204ENST00000392003 WTIPA6NIX2 430 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-204ENST00000392003 FANCCQ00597 558 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 DZIP1Q86YF9 867 aaKnown RBP11.01□□□□□ -0.65
COL6A3-204ENST00000392003 CCDC112Q8NEF3 446 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 CTCFLQ8NI51 663 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-204ENST00000392003 RIOK1Q9BRS2 568 aaKnown RBP11.01□□□□□ -0.65
COL6A3-204ENST00000392003 CABP5Q9NP86 173 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 TRIM75PA6NK02 468 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 USP17L12C9JPN9 530 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 USP17L21D6R901 530 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 LONRF3Q496Y0 759 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 TMX4Q9H1E5 349 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-204ENST00000392003 PRDM1O75626 825 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 PTPREP23469 700 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 KRT2P35908 639 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 NR5A1Q13285 461 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 ARID5BQ14865 1188 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 CEP135Q66GS9 1140 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 SPTY2D1Q68D10 685 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-204ENST00000392003 FBXO33Q7Z6M2 555 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 NBPF11Q86T75 865 aa11.01□□□□□ -0.65
COL6A3-204ENST00000392003 OSBPL5Q9H0X9 879 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-204ENST00000392003 KIF2AO00139 706 aaPredicted RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 MYO1BO43795 1136 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 BMP15O95972 392 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 UBASH3AP57075 661 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 PDE4BQ07343 736 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 SEC23AQ15436 765 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 CFAP100Q494V2 611 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 SPECC1Q5M775 1068 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 ENAHQ8N8S7 591 aaPredicted RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 SMARCE1Q969G3 411 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 FAM212AQ96EL1 285 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 PCDHA5Q9Y5H7 936 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 LAMB2P55268 1798 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 CYP2D7A0A087X1C5 515 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 POLR2DO15514 142 aaKnown RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 PRPF3O43395 683 aaKnown RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 GYS2P54840 703 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 CEP83Q9Y592 693 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 V9GY48 417 aaPredicted RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 NRAPQ86VF7 1730 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 AMOTL1Q8IY63 956 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 ELOA2Q8IYF1 753 aaPredicted RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 ZNF579Q8NAF0 562 aaKnown RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 BORCS6Q96GS4 357 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 ATP8A2Q9NTI2 1148 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 AATFQ9NY61 560 aaKnown RBP eCLIP11□□□□□ -0.65
COL6A3-204ENST00000392003 VPS54Q9P1Q0 977 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 RSPH14Q9UHP6 348 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 SRPRBQ9Y5M8 271 aaKnown RBP11□□□□□ -0.65
COL6A3-204ENST00000392003 RREB1Q92766 1687 aa11□□□□□ -0.65
COL6A3-204ENST00000392003 G3V3G9 751 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 DDAH1O94760 285 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 TNNT3P45378 269 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 TOB1P50616 345 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 MECOMQ03112 1051 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 POSTNQ15063 836 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 DCAF8Q5TAQ9 597 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 METTL16Q86W50 562 aaKnown RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 PDILTQ8N807 584 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 TRMT1Q9NXH9 659 aaKnown RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 FBXO2Q9UK22 296 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 PCDHB6Q9Y5E3 794 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 C6orf229H3BNL8 230 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 SERPINB2P05120 415 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 ADRA2BP18089 450 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 HMGB2P26583 209 aaKnown RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 GTF2A1P52655 376 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 CTR9Q6PD62 1173 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 NSUN4Q96CB9 384 aaKnown RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 SERTAD1Q9UHV2 236 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 TSPY2A6NKD2 308 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 CCZ1BP86790 482 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 CCZ1P86791 482 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 NCAPHQ15003 741 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 TMEM132AQ24JP5 1023 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 OXER1Q8TDS5 423 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 LRRC4BQ9NT99 713 aa10.99□□□□□ -0.65
COL6A3-204ENST00000392003 ARPP21Q9UBL0 812 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-204ENST00000392003 CCP110O43303 1012 aa10.98□□□□□ -0.65
COL6A3-204ENST00000392003 SLFN14P0C7P3 912 aa10.98□□□□□ -0.65
COL6A3-204ENST00000392003 AMIGO3Q86WK7 504 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms